Slub000218.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992274.1:3821102-3823193[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-10 3.8e-07 30.7 0.0 4 35 38 70 35 76 0.92
Sequence Information
- Coding Sequence
- ATGATCGAGAATTCCCAAGCCTGGCTGGGCGCTTCAACATCTGCAGCAATCGCAGATAACACCATCGGATCCAAATCCCGTAAACTAAAATCACCGACATGGACACAAAGGGAGCTGCAAGAAGCCATACACGCGGTCAGCACACAAAAAATGAGGTTCACTCAGGCTTCCACGAGCTACGGCATACCAAAAGGAACACTATATGATAATATTTTGGGTAAAGCAAAACGAATGGCTGTATTAGACGAAGCTGGGATATTACCCAGCGAGGAAAAAGCTCTATTAGACTTCTGTTGCGACACTGGTGTTTCTCCCTATAACAGGCGGACTAACAAATCATTAAAAGAAGTGTTGCCATTTGTACAAAAATTACTGAAAGCGAGAAATGCCAGTTATGACTTCACGGGTCTAACTGGGTTCAGATGGTGGTgggcattttgtaaaaagcatTCTATCGTTTCTCTGTACTATGACGGagcattaagaaataaaaaatcaaagcgAAAAGAAGAAGACGAAGAGACGTGA
- Protein Sequence
- MIENSQAWLGASTSAAIADNTIGSKSRKLKSPTWTQRELQEAIHAVSTQKMRFTQASTSYGIPKGTLYDNILGKAKRMAVLDEAGILPSEEKALLDFCCDTGVSPYNRRTNKSLKEVLPFVQKLLKARNASYDFTGLTGFRWWWAFCKKHSIVSLYYDGALRNKKSKRKEEDEET*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822891; iTF_00441430; iTF_01197659;
- 90% Identity
- iTF_00822891; iTF_00441430; iTF_01197659;
- 80% Identity
- -