Slub021141.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992290.1:18376781-18377488[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8 1.3e+04 -3.0 0.3 35 44 3 12 3 12 0.83 2 2 7.5e-13 1.1e-09 38.8 0.0 3 39 16 53 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCACGACGTTACCAAAGGAAGACTGAGACCAAATACAAATTAGAAGATTTAGAAAAAGCCGTTCACGATGTAAGGAACAAAATAATGTCGTTAGGAAAGGCATCTATTATTTATTCTGTTCCAAAAAGTACTATACATGACTATCTcaagaaagaaataataaatgaacCTAAAACTGGAAGAAAAGCTATATTTACTGATGCACAAGAAACTGAATTAGAACAACATATAATTAAATGCAGCAAAGTATTTTATGGCTTAACAATAGAAATGGTGCGaaaaatagcttttaaattTGCAGAAGTGAATCAATTGAAACATAATTTTGACAAAACATCTCAAATGGCAGGAAAAGACTGGTTTTATGGATTTAAAAAGAGACACCCTGAAATTTCGCTTCGTAAGCCTGAGTCTACTTCTATCAATAGAATAACAGCGTTTAATGAAACGGaggtaaaaatgttttttaacaatttagaAGCCGTGCAAGCAAAATATCACTTTGATGGTAATCGTATTTACAATGTGGACGAGACCGGTATTTCTAATGTCCAAAGGAATTCAAGAATTTTGGCGCCAAAAGGTCAAAAACAAGTCGGTATGGCAACAAGTGGTGAACGAGGCACGACAACAACAGTTGTTTGCGCATTCAGTGCTTCTGGAAGGTATGTTCccccatttttatttttaaaaggaagCGAATGA
- Protein Sequence
- MPRRYQRKTETKYKLEDLEKAVHDVRNKIMSLGKASIIYSVPKSTIHDYLKKEIINEPKTGRKAIFTDAQETELEQHIIKCSKVFYGLTIEMVRKIAFKFAEVNQLKHNFDKTSQMAGKDWFYGFKKRHPEISLRKPESTSINRITAFNETEVKMFFNNLEAVQAKYHFDGNRIYNVDETGISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAFSASGRYVPPFLFLKGSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00420473; iTF_01341105;
- 90% Identity
- iTF_00420473;
- 80% Identity
- -