Ssim007569.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453060.1:19946552-19947997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0064 0.58 11.5 5.0 2 23 152 174 151 174 0.96 2 9 0.072 6.5 8.2 2.9 2 21 180 199 179 200 0.90 3 9 0.00011 0.01 17.0 1.0 2 23 253 275 252 275 0.95 4 9 0.012 1.1 10.6 2.8 2 23 283 304 282 304 0.97 5 9 0.014 1.3 10.4 2.4 2 23 310 330 309 330 0.96 6 9 0.0064 0.59 11.5 5.4 1 23 336 359 336 360 0.97 7 9 0.064 5.8 8.3 1.0 1 23 366 388 366 388 0.96 8 9 2.8e-05 0.0026 18.9 0.2 1 23 393 415 393 415 0.98 9 9 0.00054 0.049 14.9 1.7 1 23 421 444 421 444 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTTGAAAATAGAACTTTAATCCAATGTCGTATTTGTTTGAATTCCAATATGAATAAATACGTATCAATATTTGGAACATACCAGGAATTCtctattcaatattatatattggCGATAACAAATGTTGAAATGAAAAAGGAAGATGGTTTTCCAGAGATAATATGTTCGGGTTGCCTCTTGGAGCTCGAAGCGGCCgtgaaatttaaacaaaagtgCGTAAACTCAGACATGATATTAAAAAAGACTAGGAAAGCAATTAATGAGCTGCGCGGTGACGTTGATACAGACGTTAAGGATATTATAACAGTTAAGAAAGAGGAGcctatagaaattaaaattgaacCATGCACAGATGATGTAGATGAGTATTATGATGTTAATGTGTTGGATGATGTGTCAGAACATGAGATCAAACCATTCAAAAGTAGGGCGatagatttaaaattagaatGCCACGATTGTGGCAACTTATTCAAATCAAAATGTAAGCTTCGAGTTCATTGGAAGAAAACTCACATGTTGAGTTCCCTCATCTGTGACATCTGTAAACGCCGGTTTAAGAGCTACAAGGCCTATCACATGCATAAAAAGCATAAACTACAGAGTTGTAACACAGCCGGTAACAAATTAGTAAAAATAGAAGGTGAAGGCAAATTTAGAATATTCCATTGTACAGAGTGTAAGTTCCAATCTAAATATGTGAAGGTTATTCAGTCGCATATTGTAATACACAGTGGGGACAAGCCCTGCCAGTGCACACTATGTCCCAACCGCTACACACAGTTAAGTTCCCTCCAAGCACACATGGAGTCCgcccacaaaaaatattttgtagaaaaACCGTGCCATTTTTGTGGAAAACAGCTGAAGGGACGCTTACAAGTATATCgtcatatgaaaacacatacagAGGCAAAAAAATCGTGTACAATTTGTCAAAAAATGGTAACAAACAAGAGTATGAAGCAACATATGCAAAGACACACGGGGGTGAAGTCATTTACGTGTGAAAAATGTGCTTCAACATTCTACACTTTGAGTGAACTTTGCAACCACAAACGTCGGGCGCATCACAAGGTGAATGATGCATTTAAATGTGACCTGTGTAACTACACAGCAAGCAGGAAAGAAAGGATAGCTATCCATAAGAAAAATCACACAGAAACGAACTTCCCTTGTACTGTTTGTGGAATGTTCTTCACAACAGTACCTAAGTTGGAAGCACATCAGAAAAGTCACTATGAGGAAAAGAAATTTGAATGTTCATACTGTGACATGAAGTTCTACAGAAGAGACTCTGTTGGCAAGCATGTGAAGAGCAAACATAAATGCATATTACAAGTAACAAAGGAGAAAGTTCCTGTTATGTTTAAAGATGAACAAATTGAAACAGATGACTTACTAGTTACGATCACTAGAAAGAATAAGAAAGTAGAATAA
- Protein Sequence
- MSVENRTLIQCRICLNSNMNKYVSIFGTYQEFSIQYYILAITNVEMKKEDGFPEIICSGCLLELEAAVKFKQKCVNSDMILKKTRKAINELRGDVDTDVKDIITVKKEEPIEIKIEPCTDDVDEYYDVNVLDDVSEHEIKPFKSRAIDLKLECHDCGNLFKSKCKLRVHWKKTHMLSSLICDICKRRFKSYKAYHMHKKHKLQSCNTAGNKLVKIEGEGKFRIFHCTECKFQSKYVKVIQSHIVIHSGDKPCQCTLCPNRYTQLSSLQAHMESAHKKYFVEKPCHFCGKQLKGRLQVYRHMKTHTEAKKSCTICQKMVTNKSMKQHMQRHTGVKSFTCEKCASTFYTLSELCNHKRRAHHKVNDAFKCDLCNYTASRKERIAIHKKNHTETNFPCTVCGMFFTTVPKLEAHQKSHYEEKKFECSYCDMKFYRRDSVGKHVKSKHKCILQVTKEKVPVMFKDEQIETDDLLVTITRKNKKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288358;
- 90% Identity
- -
- 80% Identity
- -