Basic Information

Insect: Spicauda simplicius
Gene Symbol: -
Assembly: GCA_949699795.1
Location: OX453082.1:12608797-12618364[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7 1.6e+02 3.8 0.0 2 19 205 222 204 226 0.90

2 12 5.5e-05 0.005 18.0 3.5 1 23 232 255 232 255 0.95

3 12 0.054 4.9 8.6 2.3 1 23 269 291 269 291 0.97

4 12 0.00018 0.016 16.4 4.1 1 23 562 584 562 584 0.98

5 12 0.00063 0.058 14.6 1.0 3 23 591 612 590 612 0.97

6 12 0.00097 0.088 14.1 2.4 2 23 621 642 620 642 0.97

7 12 0.00069 0.063 14.5 3.2 2 23 646 667 645 667 0.97

8 12 0.054 5 8.6 1.0 2 23 681 703 680 703 0.96

9 12 6.1e-05 0.0056 17.8 1.6 1 23 709 731 709 731 0.98

10 12 0.25 22 6.5 4.1 2 23 738 759 738 759 0.97

11 12 0.021 1.9 9.9 2.2 1 23 765 788 765 788 0.94

12 12 0.023 2.1 9.7 1.4 1 23 792 815 792 815 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7	1.6e+02	3.8	0.0	2	19	205	222	204	226	0.90
2	12	5.5e-05	0.005	18.0	3.5	1	23	232	255	232	255	0.95
3	12	0.054	4.9	8.6	2.3	1	23	269	291	269	291	0.97
4	12	0.00018	0.016	16.4	4.1	1	23	562	584	562	584	0.98
5	12	0.00063	0.058	14.6	1.0	3	23	591	612	590	612	0.97
6	12	0.00097	0.088	14.1	2.4	2	23	621	642	620	642	0.97
7	12	0.00069	0.063	14.5	3.2	2	23	646	667	645	667	0.97
8	12	0.054	5	8.6	1.0	2	23	681	703	680	703	0.96
9	12	6.1e-05	0.0056	17.8	1.6	1	23	709	731	709	731	0.98
10	12	0.25	22	6.5	4.1	2	23	738	759	738	759	0.97
11	12	0.021	1.9	9.9	2.2	1	23	765	788	765	788	0.94
12	12	0.023	2.1	9.7	1.4	1	23	792	815	792	815	0.95

Sequence Information

Coding Sequence: ATGGATGAAGAGTCGTACAGTGTAAAGGCGGTAAAACCGTTCAGAAATGCGCATAATAAATTCGAGAAAACAATCAATTATAAGTCTCAAGCTAGAGAAAAAGTCTTCGAACCGTTAACTACCAAGAATGCAGTGAAGTTTCTATTGGAAGGAacattaaaatacaaagtttgtaGATACTGTTTGAATGTGGCGTCCCGATTGTCGGAATTGGATGAAATATTCGAGGTGGGACGTAAAGGTGCTATTTATAAGGTTACACTGAGGGATATGATCGCTAGCGTCCATCCCTTCAAGGTTATTCATGATCCAAACTTTCCCGACAAACTTTGTGGCACATGCGTCGAAAGTGCTATCAGCGCATATTTATTTGCCCAACAGTGCGAAAAAGCTGAGCGTGCGTTGCGTAATTGTTTCGAAGACATATATGACAAATTCGAAAAGTTAGACCCTTTAGAACGGGGCAAAAAGCGAGGCAGACAAAAAGCGAATCCAAACACTAATATATTGTATACCGAACACGAAATAGTAACAGATTATGCAGAACCAatcatcaatattataaatttaggCTCAACAGCTATTGAGCAAGAGAGGCAAATTAATGAGTTGGAATGCCCTAAATGTTGGCAGGTATTGCCAAACGTGGAAGCCTTGTTGAATCATGACAATTTACACCCAAAAAACATGTGGTTTAATTGCAAGTTGTGTGGCCAATCGTTTGTCAAACAACGCCATTACAAGAGACATATTAAGGACGTACATCAACATGGAAGCATTATACTAGAACGCACAAACACAAATTTCAAATGTAATGAGTGTGGTTTTATGAGTAGTAATGTCAGCCAACATTTGCAACATATGGAGAagcataaatttaaaactacgtttaAACATCTCATAAATAGAAAAATGGACCAAATATGTGCTATGTGCCTAGAGAAAGGTACATGTATGTTACATTTGAATGAATCAATACATTTGAGTGGCGGTTATCCAGGCCTAAATAATGAGCAgtcaatatataatattgtatccTCAACATTTCCTGAGATGACTATACATAACTACACAGGAACACATATATGCGATAAATGTCTAGATCATGCTATTTCCTCGTATGTATTTGTTAGCAAAATACGGCATGTAAGAAGTAGGCTGTTCACTTGCGTTAGTCTCATGTTAGATCAGTTGAATGATATATGTGATTATGATAAGAATGTTATGGTAGAAATATCACAAGAAACCATTCTTCCGCTAGTTAAAGATGAATTCGAAATTAAGATCGAAGAAGACGATGAGTCTAAATTCGAAGTTGACGTTCTAGAAGACGAGTTCAGAATTAAATCTAGCAGTTCATCAGATGAGGAAAGTGATGTGAAATCGGATGTTTCTGATATCAAAAATAATGTGTTGTCTGAAGACGAGAATGTGTTAAAaccaaataacataataaagtcTGATGAAGAAAATGGCACAGAATCTAATAATACTGTTAAAGAGGATTTGGAAGAGGCTTTAGACAACCCAGCGAAGAAAGTTACCAAAACATACGTGAATAGAAAACTTCTGAACGGCTATCAGAGTCTGCTGTCTTTAGAAGACGATTCGCTTAACGACGTATGTGAATTTCTAACGTTCAGAAAGAAACGGAAAACGTTCCGTCGTTCCTATAAATGTAAATTCACTTGTCCGTACTGTAACAAACATTTCATCTCTGATTATTTCCTGAAGAAACATGTTTTGAAACACGCCATATCCAAAGTTGATTGCAAGAGATGCGGAATGCAGTTCAAATCGAAATTCTATTTGTACGAACATATCAAGATGATCCATCTCATGAAGGAAAGCTGTTACAGTACATGCAAGGTCTGTGGAAGAATGTTCAATAACAcgaagaaaatgaaaatgcacGAACGAAGTCATTGCACGAAAGAGTGTCAACTTTGCGATAAGTTCTTCGTTTCCCAGAAGCATTACGACTTGCATATGCAGAGGCATGCGATGAAACTCAACATGATAAAGAATTGGCGGATTCAGACATGTAGTTTTTGTGAAAAAGAGTGCGCGAACGAAAACGAATTATCACTTCACGTCAACAAGGCACATTTGCAAATAAAACCTTACAGTTGTGATATGTGTGATAAACTGTTTTACACGGAGTACGATTTGAAAAATCACAAAAAGGTGCATAATCTTCTTTCAGAGGAGTCGTGTGAGTTTTGCAACAAGACTTTGAAATGCAGGAAAAACTTAGTTATTCATGTACGTAAGCATTTAGGCACCAAACCCCATGTTTGTCAAGTGTGTAGACAGTCGTTTTACTCAGAGAACAGGATGAAACGGCACATGGTAATATACCACGGCGGTAGGTTTTGTTGTAGACTTTGTAAAATGGTCATGGCCACGAAGAGTGAACTGAAAACTCACATAAGTATTGAACATAATGCCATGTAG
Protein Sequence: MDEESYSVKAVKPFRNAHNKFEKTINYKSQAREKVFEPLTTKNAVKFLLEGTLKYKVCRYCLNVASRLSELDEIFEVGRKGAIYKVTLRDMIASVHPFKVIHDPNFPDKLCGTCVESAISAYLFAQQCEKAERALRNCFEDIYDKFEKLDPLERGKKRGRQKANPNTNILYTEHEIVTDYAEPIINIINLGSTAIEQERQINELECPKCWQVLPNVEALLNHDNLHPKNMWFNCKLCGQSFVKQRHYKRHIKDVHQHGSIILERTNTNFKCNECGFMSSNVSQHLQHMEKHKFKTTFKHLINRKMDQICAMCLEKGTCMLHLNESIHLSGGYPGLNNEQSIYNIVSSTFPEMTIHNYTGTHICDKCLDHAISSYVFVSKIRHVRSRLFTCVSLMLDQLNDICDYDKNVMVEISQETILPLVKDEFEIKIEEDDESKFEVDVLEDEFRIKSSSSSDEESDVKSDVSDIKNNVLSEDENVLKPNNIIKSDEENGTESNNTVKEDLEEALDNPAKKVTKTYVNRKLLNGYQSLLSLEDDSLNDVCEFLTFRKKRKTFRRSYKCKFTCPYCNKHFISDYFLKKHVLKHAISKVDCKRCGMQFKSKFYLYEHIKMIHLMKESCYSTCKVCGRMFNNTKKMKMHERSHCTKECQLCDKFFVSQKHYDLHMQRHAMKLNMIKNWRIQTCSFCEKECANENELSLHVNKAHLQIKPYSCDMCDKLFYTEYDLKNHKKVHNLLSEESCEFCNKTLKCRKNLVIHVRKHLGTKPHVCQVCRQSFYSENRMKRHMVIYHGGRFCCRLCKMVMATKSELKTHISIEHNAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -