Ssim023996.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453080.1:12550438-12572947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.19 13.0 1.7 1 23 256 279 256 279 0.94 2 13 0.078 7.1 8.1 5.3 1 23 286 308 286 308 0.98 3 13 2.8 2.6e+02 3.2 0.6 1 19 312 330 312 334 0.91 4 13 0.00012 0.011 16.9 3.8 2 23 340 361 339 361 0.98 5 13 5.6e-05 0.0051 18.0 0.1 1 23 365 388 365 388 0.97 6 13 0.22 20 6.7 1.4 3 20 634 651 632 653 0.94 7 13 0.032 2.9 9.3 1.1 1 23 741 764 741 764 0.92 8 13 0.0043 0.39 12.0 6.8 2 23 825 846 824 846 0.98 9 13 2e-05 0.0018 19.4 0.4 1 23 850 873 850 873 0.97 10 13 0.094 8.5 7.8 1.0 3 20 891 908 889 910 0.93 11 13 0.00013 0.011 16.8 1.7 2 23 979 1001 978 1001 0.96 12 13 9e-05 0.0082 17.3 1.2 1 23 1040 1062 1040 1062 0.98 13 13 3e-05 0.0027 18.8 1.9 3 23 1070 1091 1068 1091 0.97
Sequence Information
- Coding Sequence
- ATGGATCTAAGAATTTGCAGAATTTGCCTCACAGTTGAAGCCAGAGGTTATAAATATGATAGGTTTCAGTTAAAATCTTACTATGAACAAGTTATAGTAAGAAGAGTAAATGATCAAGATGGTCTACCGCACTACTTCTGCTATGTATGTGCCACAATGCTACACAAATTCCACAAGTTCAAAGAGAAATGCTACTCGGGACAGAAGGTGTTGAAGGAAATGCTTTGGAGGGGTCCGATAACCTACGAAGCTGTATTTAAGGTTGATAAAACAGACTATGGTCTGCAGTCTTCATTGAGTATAAGTAATGTTAACAGCACAGTCAAGGAATATTCTTACAAAGAACTTGAAGAAATAGAGATAGACATTAAACCTGACATAGGTGTAATTGAAGATGATATTGGTGTAGATTTGGATGACGCGTATACAGACGATGAGGGTAACGACCCAGAGGAAGACCCAGTGGATGtagataagattaaaatagagGATCATGAAGTTCCAGAGTTGAAGAGAACAGCAGACACCAATGATAAAATTGTTGTTAAGAAAGAGACAGAAGTAAAAAAGACTGCAGTAAGAAAGAAGGCAGTCACAGGGGAAAAGAAGAGAAAAATAAAGCGTGATGCCGATGATGGAGAAGAAACTGATAAAAAAGGGGTTATATTGAGGAGCAATCATTGGAAAGTGATTGATTTAAATGAAGAGGAGGCAGTTACGgcaTTCAGAGCAAGAGCTGAAGACAAGACATATCTGAAAGCTGCCTACAAATGTACCGATTGTTTCAAGGGTTTCGCTGCGGAAAAAAGTCTGAAACGGCATAACAAATTGAGGCACAGTGAATATAGCGGCAAATTTGAGTGCCGCTTCTGTCACGTTCGCTTCAAACTGGATCTCTACTTGAAACGTCACATGAAACGACACTTCGAAAAGTACCAGTGTCTACGGTGCACTATGGTGTTTGAATTCGCGTCCTCTGCTTTCCAACATGATGAATATCACAGCGGTGTCGTGAAAAAATGCGGGTACTGTGACCAAGAATTCAGGCACTCGTCGTCGTACTACTCTCACCTACGCACGCACCGCAGCGAGTTTGTGTGTACGCTGTGTGGCGTGTCCTTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGTGAGTGCACGCGCTACCGgctccctctctctctctctgcaTAGTCCGTATGTCCTCATCACGCGCGCCGGCCTGCTCCAGCACCAGCGCCTCACGCACGCCGTCGAGGACGTCGAAATCGAAGACGACGACGAGGAGGTAAACACGTTCTGCAAGCGATGCGACATTCGATTTGAGACCCGCAAAGCGTACAACGAGCATCTGTTCCACTCGGCGATGCACGCGGATCATGTCACAAAACCAgtcaaaaatgataaaattaacgATAACAAAGagacaaaagtaaaaaaggaGACAACCGTAAAGGGAAAGAAGAGAAAGGTGAAATATTACAACAATGATGGAGAAGAGACTAATTTAAAAGGGCGACTACTGGCGAGCAATCATTGGAAAGTGATTGAATTGAATGAAGAGGAGGCAATTACGgcaTTTAGCGCAAAAGCTGAAGATAAGAAATATCTGAAAGCAGCCTACAAATGTGCAGATTGTTTCAAGGGTTTCTCTACGGAAATTATTCTGAAGCGGCATAACAAATTGAGGCACTGTGAATCTTTAGGCAAATTCGAGTGCCGCTTCTGTCACATGCGCTTCAAATGGGATTGCTTCATGAAACGTCACATGAGACAACACTTCGTGAAGTACAAGTGTCTACGGTGCAGCTTGGTCTGTGACGTCGAgTACAATGCTTTCCTACATGATGAATATCACAGCGGTGTCGTGAAAAAATGCGTGCACTGCGACCAAGAATTCAGGCACTCGTCGACGTACTACACGCACCTACGCAAGCACCGCAGCCAGTTCGTGTGCACGCTGTGCGGCGCGTCCTTCGTCAGCCGCTTCGGCCTGCGCCAGCACCAGCGCGTCACGCACGCCGTCGAGAACGTCGAAatcgacgacgacgacgaggAGGTGAACACGTTCTGCAAACGGTGCGACATCCGCTTCGAGACGCGCAAAGCCTACAAGGAGCATCTGATCCACTCGGCGATGCACTCGGAGGACCTCATGGAGGGTATCGACGACATAGAGACAACCCCAAGCGAAGTGCTCGAGAATAAAATGGATAGTAAGatcacCAATGCAGAACCAGACTTGCAGAAACCaaaatcaaATGATACGCAGCTTAATCCCGCTTACAAGAAAAAGCAGTGGGGGCTGGCTAgaaaggcaaaaaaaaaaccaacaacATGTTATCAGTGTGGGAAAAGCTTCGAGACCCAGGCAGCGTACATGAAGCATCACTTGACTGAACATCCGCGTACCTCGTTCCACTCGCCCACAGAGCGGCAAATATGCGAGATCTGCGGCGCTTCGCTAGCGCCCGGTAGTGTCGCGGCACACTTGAACGTGCACACAAAGGAGAAGATGTACTCGTGTTCCACTTGCGGCAGGCAGTTCTCCGCCAACGTCAGCTACAAGCGACATCTGTTGaCGCATACCGGCGAGAAACCGTTTGGTTGCTCACTATGCGACAAACGATTCACCCAAAGCAATAGTTTGAATTTACACTACAGGACGTTTCATCTGAAGGAACCCTATCCGAAAAGgaACAGAAGAAAAAAGGAGACTGATGTCAAAGAGCCAGAAGTCGGCAACGACGTTTTAGACGATGACTCATATGACAGTCTCATTTAA
- Protein Sequence
- MDLRICRICLTVEARGYKYDRFQLKSYYEQVIVRRVNDQDGLPHYFCYVCATMLHKFHKFKEKCYSGQKVLKEMLWRGPITYEAVFKVDKTDYGLQSSLSISNVNSTVKEYSYKELEEIEIDIKPDIGVIEDDIGVDLDDAYTDDEGNDPEEDPVDVDKIKIEDHEVPELKRTADTNDKIVVKKETEVKKTAVRKKAVTGEKKRKIKRDADDGEETDKKGVILRSNHWKVIDLNEEEAVTAFRARAEDKTYLKAAYKCTDCFKGFAAEKSLKRHNKLRHSEYSGKFECRFCHVRFKLDLYLKRHMKRHFEKYQCLRCTMVFEFASSAFQHDEYHSGVVKKCGYCDQEFRHSSSYYSHLRTHRSEFVCTLCGVSFITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVVSARATGSLSLSLHSPYVLITRAGLLQHQRLTHAVEDVEIEDDDEEVNTFCKRCDIRFETRKAYNEHLFHSAMHADHVTKPVKNDKINDNKETKVKKETTVKGKKRKVKYYNNDGEETNLKGRLLASNHWKVIELNEEEAITAFSAKAEDKKYLKAAYKCADCFKGFSTEIILKRHNKLRHCESLGKFECRFCHMRFKWDCFMKRHMRQHFVKYKCLRCSLVCDVEYNAFLHDEYHSGVVKKCVHCDQEFRHSSTYYTHLRKHRSQFVCTLCGASFVSRFGLRQHQRVTHAVENVEIDDDDEEVNTFCKRCDIRFETRKAYKEHLIHSAMHSEDLMEGIDDIETTPSEVLENKMDSKITNAEPDLQKPKSNDTQLNPAYKKKQWGLARKAKKKPTTCYQCGKSFETQAAYMKHHLTEHPRTSFHSPTERQICEICGASLAPGSVAAHLNVHTKEKMYSCSTCGRQFSANVSYKRHLLTHTGEKPFGCSLCDKRFTQSNSLNLHYRTFHLKEPYPKRNRRKKETDVKEPEVGNDVLDDDSYDSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -