Ssim012341.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453065.1:17970025-17985532[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.67 61 5.1 0.2 3 23 113 133 111 133 0.96 2 16 0.08 7.3 8.0 0.2 2 23 137 159 136 159 0.92 3 16 0.0067 0.61 11.4 0.2 1 21 416 436 416 437 0.95 4 16 0.027 2.5 9.5 1.0 3 23 448 468 447 468 0.96 5 16 0.0078 0.71 11.2 2.6 1 23 516 539 516 539 0.91 6 16 1.2 1.1e+02 4.3 0.3 8 23 590 606 580 606 0.88 7 16 4.1 3.7e+02 2.7 0.3 3 19 617 633 616 638 0.78 8 16 5.1e-05 0.0046 18.1 1.6 1 23 672 694 672 694 0.97 9 16 7.7e-06 0.0007 20.7 1.8 1 23 701 723 701 723 0.98 10 16 8.8e-05 0.008 17.3 2.3 1 23 728 750 728 750 0.96 11 16 0.00037 0.033 15.4 1.5 1 23 756 778 756 778 0.98 12 16 0.0001 0.0093 17.1 1.1 1 23 784 806 784 806 0.94 13 16 0.00058 0.053 14.8 1.1 2 23 813 834 813 834 0.98 14 16 0.00037 0.034 15.4 0.8 2 23 842 864 841 864 0.97 15 16 0.00033 0.03 15.5 0.2 1 23 869 891 869 891 0.98 16 16 0.00024 0.022 16.0 1.2 1 23 897 920 897 920 0.98
Sequence Information
- Coding Sequence
- ATGGCATCTGACGAGTCAGACGATGAGCCCTTATCTGTTTTGGCGGCTGCGAAGAAAACAAATCCTGAGGAATTCGCCTACGAAATACTTTCGGTACACGAAAAAGAATCTAAAAAGCGAAAGTTAAGGAATTCGGCgttaactattaaaataaatcgtaaATTTAGCACTATAGCGAGTGTAGCGACGCCAGTTATAGATAGGCCTACGGATGTTTGGTTGTATTTAAAAGATTTGAACCCAACCGGACCATACAAATGTCTCCTTTGCGCAGACTGGTTTATAAATCGCTCTAAAATGGTAGTACATTATGTTCTTAATCACAAGAAGGACTTTTGTGGTATCTGCAGGTACTTTGTGGCTGATAGAGAAAGCTGGACAGAGCATTTAAAGTTTCATACCCCATGGCCCTGCTCTCAATGTGTGGAGACTTTCCATACAGAAGTGGGGCTCCGACAGCACCTAGGTTCTGTGCACAAATTGGTCCACTGCAGGCTCTGCCACTTCCGATTACCTGTTGGCGAGGAATATGAAGCCCATTTGTTCCAGAAACATAATGTGACAAACACTTCATGTAAGGATGAAGAGGTTTTCTGGGAGCTTGATGTCCACGGCTTGCCAAAATTCAACTGTTTTCTCTGTTCTAAAGTTGATAATTTAACATCTACATTCTTCACTCATTACATGGGATTCCATCATTTCACTCTGAAGTGTGTCACTAGTTTTATTTCTGGTACTGACCCACCATTCACAGTGCATGGTGCTGAAGTTAGCTCACAATTTGTTGATGGAGAGTTGAGGGGGCTCAATGCACTGGGTTATATAGATGGTGAACAAAAACCCAATGAGAATAATCAGGAGAGTAATCAAAGTGCAACAACTGACTCATCAAAGGACCAAATTGAACTAAAAGCTAAAACAGAAtttgaagaaaaatatgaaGACACTTCAAACAAAGTGGAGAGCCAGAATGAGAGTGTAGATGATACCCAAGGTTATGAGGGTGATGAGGACTTTGATATAACATTAACAGAATTGATTGTACTCCAAAAATGTTACTTTGACTATATAAAGCAAACATTAGACGACATTTCTAACAAACTAGTACCAGAAAAGTCagatattgataataataaggCCATAAACATTGATGTGAACTGTACTATATGTGAAACTAAGTATCAATGTGTGCCAACATTTGTAACACACATGTACAAAATGCATTGCATGAGGTCCGTTCCAGAGTTTAGTTGTAGGGTGTGTGCAACAACATTTGAAACTTGCGATGACTTGGAAGCTCACATTTTAGAGGAGTTAGGTGATTTTGAAGATTTATGGCTATGTCAGTTCTGTGATAAGGAATTTGACAACCGAGTGGAAACAAGAAAGCATTTGACTGAACACTGGGAATCAATAGAGTATGATAATTGCTTTAGTCCTCATCTGGGGTTTAAATGCAAGTTTTGTCCAACTTTATTTTGGAATGAAGTAGACAGGGAGTCACATCAAGTTCGAGTGCATCAAAATAAACATTCACATCAATTTTACAAGTGTGATAGCTGTAAGGAAACATTTAGTGACAAGGTATGGTTCTTGCACCATTATGTAGAAAAACATGTAAAAGATGGAGAACCAGTCAGCACCTTTCTCTTAAAATGTAGCCTCTGTTGTATTGTTCTGTCCGGTGTGGATGAAATGAGGAGCCATTTTGATGATCAACACCCAGAAGCCAGAAAGTTTTACTGTTCCCTTGATCCTTGTAAATACAAGCCTTTAAGTCAGCGAAAGTCATTTAAGTTACATATGAAGACAGTGCACGGGTCGTCCCGGTCGGACAATCCGGTGGCGTGTCCGGTGTGCACGCGCGAGTTCCCCTCCGTGCGGTCGTGCAACGCGCACGCGGCGCAGGTGCACGGGCCCGGCAAGTTCAAGTGCAAGCTGTGTATGGCCGTGCTGCACACTGTGGACGAGAGAAAGCTACACTACCTCTTGATCCATCCTGGCCGGCATCCTTTTGAATGCTCGGTGTGCGGGAAGTCATTCCAATACAAGTCGTCATTATACATGCACAAGCAGGAGCACCAGCCTAACAAGCAGAGCTACACCTGCAACTATTGCTCCAAAGTGTTTGTGAAAAAGGACTCATTCCGCGAGCACCTGCAGATCCACGAAGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCGAACATGCTGCGCCACGAGCGCCGCCACACCGGCGAGCGGCCCTACGCCTGCCCGCACTGCCCGCGGACCTTCGCGGACAAGGGCGCCTGCACCTCGCACGCCAGAACGCATTCGAAGGAGTCGTCATACGCATGTATTTATTGCGGCCAGACCTTTGTCCAGAAGTCTAAACTTACCTACCACGTCAGAAAACACACGGGAGAGAATCTGGAGACGTGTTCGATCTGTGCAAAATTATTCACAAGCCCTTGCGCTTTACGGGAGCACATGAAGATTCATCTGTGCAAGAAAGAATCTGTTAAATGTCCTTTATGTGATAAGAAGTACCAAGACGAGCGCTACATGCTCCGGCACCTGCGCACGTCGCACACGCGCACGCAGTTCTCGTGCCCCATCTGCCAGAAGGTGGTCACCACGGGCGCCGGCCTGCGCCACCACGTCATAACGCACAGCCCGCTTAATACGTTCCGGTGCAAAATATGTCCAAAATCATACGCTGTCAAGAGAACCATAGTGAAACATTTGAGGCGGCGTCATAACCTCACCAATCCTACGACTAACCTCAAGGACTACTACACCCGTCTCGAGCCCAGGCAGTGCAAATTGGACCTAGATGAAGCTACTATGACTGGTATATTTGGACCCCCTAAGAATAATACTAGCGAAATTATTATATCGGACTATATCACATATAAGAAAGAACCTAAATCTAAGAAGAAAGATTCCAAAAATACACAATCAGAAGAAGAAAAAGACAGTGACACCAGTGAGGAAGAAGGTTCACACAAGGAAGGAATGGAGCAAGACGATTCGGATCATAATGGAGACGATTTAGAACCTACAGATTTTGTCAGCGTTAAGATAGAACCTCTTGATGAATATGATAGTATGGAATAG
- Protein Sequence
- MASDESDDEPLSVLAAAKKTNPEEFAYEILSVHEKESKKRKLRNSALTIKINRKFSTIASVATPVIDRPTDVWLYLKDLNPTGPYKCLLCADWFINRSKMVVHYVLNHKKDFCGICRYFVADRESWTEHLKFHTPWPCSQCVETFHTEVGLRQHLGSVHKLVHCRLCHFRLPVGEEYEAHLFQKHNVTNTSCKDEEVFWELDVHGLPKFNCFLCSKVDNLTSTFFTHYMGFHHFTLKCVTSFISGTDPPFTVHGAEVSSQFVDGELRGLNALGYIDGEQKPNENNQESNQSATTDSSKDQIELKAKTEFEEKYEDTSNKVESQNESVDDTQGYEGDEDFDITLTELIVLQKCYFDYIKQTLDDISNKLVPEKSDIDNNKAINIDVNCTICETKYQCVPTFVTHMYKMHCMRSVPEFSCRVCATTFETCDDLEAHILEELGDFEDLWLCQFCDKEFDNRVETRKHLTEHWESIEYDNCFSPHLGFKCKFCPTLFWNEVDRESHQVRVHQNKHSHQFYKCDSCKETFSDKVWFLHHYVEKHVKDGEPVSTFLLKCSLCCIVLSGVDEMRSHFDDQHPEARKFYCSLDPCKYKPLSQRKSFKLHMKTVHGSSRSDNPVACPVCTREFPSVRSCNAHAAQVHGPGKFKCKLCMAVLHTVDERKLHYLLIHPGRHPFECSVCGKSFQYKSSLYMHKQEHQPNKQSYTCNYCSKVFVKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHARTHSKESSYACIYCGQTFVQKSKLTYHVRKHTGENLETCSICAKLFTSPCALREHMKIHLCKKESVKCPLCDKKYQDERYMLRHLRTSHTRTQFSCPICQKVVTTGAGLRHHVITHSPLNTFRCKICPKSYAVKRTIVKHLRRRHNLTNPTTNLKDYYTRLEPRQCKLDLDEATMTGIFGPPKNNTSEIIISDYITYKKEPKSKKKDSKNTQSEEEKDSDTSEEEGSHKEGMEQDDSDHNGDDLEPTDFVSVKIEPLDEYDSME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288284;
- 90% Identity
- iTF_00288284;
- 80% Identity
- -