Basic Information

Insect: Spicauda simplicius
Gene Symbol: -
Assembly: GCA_949699795.1
Location: OX453067.1:19570160-19578189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.17 15 7.0 0.8 1 19 114 132 114 133 0.88

2 8 8.2e-07 7.4e-05 23.7 1.8 1 23 142 164 142 164 0.99

3 8 0.00081 0.074 14.3 0.9 1 23 170 192 170 192 0.97

4 8 5.6e-06 0.00051 21.1 0.7 1 23 198 220 198 220 0.97

5 8 1.2e-05 0.0011 20.1 1.2 1 23 226 248 226 248 0.97

6 8 0.54 49 5.4 0.8 2 23 254 276 253 276 0.90

7 8 0.012 1 10.7 1.1 1 23 296 318 296 318 0.96

8 8 6.3e-08 5.8e-06 27.2 3.1 1 23 324 347 324 347 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.17	15	7.0	0.8	1	19	114	132	114	133	0.88
2	8	8.2e-07	7.4e-05	23.7	1.8	1	23	142	164	142	164	0.99
3	8	0.00081	0.074	14.3	0.9	1	23	170	192	170	192	0.97
4	8	5.6e-06	0.00051	21.1	0.7	1	23	198	220	198	220	0.97
5	8	1.2e-05	0.0011	20.1	1.2	1	23	226	248	226	248	0.97
6	8	0.54	49	5.4	0.8	2	23	254	276	253	276	0.90
7	8	0.012	1	10.7	1.1	1	23	296	318	296	318	0.96
8	8	6.3e-08	5.8e-06	27.2	3.1	1	23	324	347	324	347	0.97

Sequence Information

Coding Sequence: ATGAATTCGCAAGTTTGTGTGAATTGTAACAATAAAAAGCCTGTGAACTCGACTACAAACCGGCTGGTGACGGAGAGCTGTGGTCATGTGAAGTGTATGGATTGTCTTCTTCATGAGAAAGCGGGTTGTGCGGCTTGTTTGAGAGACGGTAACAGTCAGGAGAATGGGGATATTCCTATGACGGAAGATGAGAGCGAAGAGCCGGCGACCGCCTACGAGGTGCCCGTCGAGATCCCAGAGACTGCTAAAGACAATCAGACTGAACTTGaagatatttgtaaaaaaataaaaccagaaACATCTCATGTCAGGATAGAAACAGATGGTACTGGTAGATACTTTGTATGTACTTTATGTAAGAAGAAGTTCCATGCACGTAGCCAGGTGATTTATCATGCATATTGCAATGGACAGAGGAAACCATACCAGTGCCCTGATTGTAATAAGAGTTTTGCAGCGTTGTCCCATTTCAAGTATCATATGAATGTACACCGGAACGAGCGCACGTACGCCTGCGACGTGTGCGGCGACAGCTTCTTCCAGATGTCCAAGCTGCAGCGGCATAAACTCAAGCACACCAAAGAGAAAAAGTACGCGTGTAGCCAGTGCAACAAAGCTTTCAACAACGTTTCCTCGCTGCGCAAGCACGGCATGACGCACACGGAGGAGCGCCCGTACGCCTGCGTGGTGTGCTCGCGCCGGTTCCGGGACTCTTCCAATTATAGGAAACACCTTGCTAAACATGAAGAAACAGAGTGCGCGTGCACAGTGTGCGGCAAGAAGCAAGAGTCGCGGCGCGCGCTGCTCGAGCACTCGCGCGCGGAGCACGGCGGGGCGGCAGGTGTGGGGGGCGCGGGGGGCGAGGGCCCGCGGCCGCGCCGCCCGCACCAGTGCCCGCGCTGCCCGCAGGCCTTCCACTCCGGGAAGGACATGAGGCGACACGCGGCGGTGCACTCGGATTCGAAACCATTTCGctgcaaggtgtgcaaccgTCGATTTAGAAGGAAGGATAACTTGGAACGCCACATACGCAACACTCACCCCAACTACGACGCATCAACTGTAGTGGAATGCGACGTGGGTGCACTGAAACAGTTGGGACACAGTCAGGAAACACCGGAAAATATTGACTCGGACGAAAGCTATCAAAACGCGGAGAAGGCTAAACTAGAGATACTTAACCCCCTCCCACCCTTGCCACCGGAGATCATACAAAAACATCTAGACTCTAAAACGACAGATCTAGAAATTACAACCAATAAGGAAGTCAATGAAAACATTAGTCAGAATAATCAAGAGGAAGTCACCTTTATAGATAAGTCGTATATCTTAGAAGCTAATAATGCTAGAGAGAGCGTAATAGTCGGCAAGTGGAACGCTACAATAGAAAGAAAAGTTTCCAGTCCCGTACCGGAGTACGTTCACAAAATAAGAAAAGCGAATTCCATCGCTTGCCGGAAGGACGTcttactaccgcccatagacgaAAGGAAACTTATAGAGTTGGAGACCAAAAACAATTTGAACAATCTAGACGTGGGCGCGCCGGGGAAGAACATGGAGATTTATAAGAAGATCCTGTACGAGAGAATGGAGAAAGAGTCGAACATGGCGAATGAAGAAGAGGTGAAGATGCATCAGACGAGTCCCAAGTTGCATTGGAGAAGGAAGTTGAAGCTTAACATGAAATAG
Protein Sequence: MNSQVCVNCNNKKPVNSTTNRLVTESCGHVKCMDCLLHEKAGCAACLRDGNSQENGDIPMTEDESEEPATAYEVPVEIPETAKDNQTELEDICKKIKPETSHVRIETDGTGRYFVCTLCKKKFHARSQVIYHAYCNGQRKPYQCPDCNKSFAALSHFKYHMNVHRNERTYACDVCGDSFFQMSKLQRHKLKHTKEKKYACSQCNKAFNNVSSLRKHGMTHTEERPYACVVCSRRFRDSSNYRKHLAKHEETECACTVCGKKQESRRALLEHSRAEHGGAAGVGGAGGEGPRPRRPHQCPRCPQAFHSGKDMRRHAAVHSDSKPFRCKVCNRRFRRKDNLERHIRNTHPNYDASTVVECDVGALKQLGHSQETPENIDSDESYQNAEKAKLEILNPLPPLPPEIIQKHLDSKTTDLEITTNKEVNENISQNNQEEVTFIDKSYILEANNARESVIVGKWNATIERKVSSPVPEYVHKIRKANSIACRKDVLLPPIDERKLIELETKNNLNNLDVGAPGKNMEIYKKILYERMEKESNMANEEEVKMHQTSPKLHWRRKLKLNMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01153236;
90% Identity: iTF_00288303;
80% Identity: -