Basic Information

Insect: Spicauda simplicius
Gene Symbol: -
Assembly: GCA_949699795.1
Location: OX453082.1:11828130-11847644[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.5 6e+02 2.0 0.3 2 11 57 66 56 72 0.82

2 9 0.0047 0.43 11.9 0.0 1 23 524 546 524 546 0.97

3 9 0.00024 0.022 16.0 4.3 1 23 562 584 562 584 0.97

4 9 0.0004 0.037 15.3 4.1 1 23 590 612 590 612 0.99

5 9 9.1e-07 8.3e-05 23.6 3.7 1 23 619 641 619 641 0.99

6 9 8.5e-06 0.00078 20.5 0.1 1 23 647 669 647 669 0.93

7 9 5.5e-07 5e-05 24.3 0.3 1 23 675 697 675 697 0.98

8 9 3.1e-06 0.00028 21.9 1.6 1 23 703 726 703 726 0.96

9 9 0.058 5.3 8.5 2.2 1 13 732 744 732 745 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.5	6e+02	2.0	0.3	2	11	57	66	56	72	0.82
2	9	0.0047	0.43	11.9	0.0	1	23	524	546	524	546	0.97
3	9	0.00024	0.022	16.0	4.3	1	23	562	584	562	584	0.97
4	9	0.0004	0.037	15.3	4.1	1	23	590	612	590	612	0.99
5	9	9.1e-07	8.3e-05	23.6	3.7	1	23	619	641	619	641	0.99
6	9	8.5e-06	0.00078	20.5	0.1	1	23	647	669	647	669	0.93
7	9	5.5e-07	5e-05	24.3	0.3	1	23	675	697	675	697	0.98
8	9	3.1e-06	0.00028	21.9	1.6	1	23	703	726	703	726	0.96
9	9	0.058	5.3	8.5	2.2	1	13	732	744	732	745	0.93

Sequence Information

Coding Sequence: ATGAATCAGCTCTGCTTTGTGTGCAACGTTCGAATGGGGATTGCTCTTCGGAATGGAATAAATCTTTTTGGAGATGATAATACGCTACAATCAGGCAAAAAGTTCACAGAAGTGTTGAGTGAGATATTAGATAAGCCGGTGCTAGAGGAATCTGCCCATTCGAAGGTTGTTTGCAAGAAATGCCATAAATTCGTGTCTGAATACGATTCTATACAAGTTAGAATGCAAGTCATAAAATTGGACCTACTATCATACTTTAAAAGCACGTTGCCACGACATAAGCTGAATTACGACACATACAACACTGAGCCGCCAAGTGTGCAAGCAAAAACGCCAACAAAAAGCGCGGAAGGCAAACCCGAGCTGCGAAAGTTAGTGTTGCCAGCGTCGAAGTTGCAGCCGGTGCCTCCCGACTTTGTTCTGAAACCCGGCAAGTGGTTTACTAAAGCGAATATCGCGAATTCGAAGCCCATCGTAACACTACCAACGTCTTCGTCAACGCTCAACTTAAAAGTAACTGTGGGTACATCCGTCCTAACGCAGAGCATCAAAACCACAAGCGCTATAGGCAACAAAATAATATCGCTCTCAAACAATTCAACACCACAGAACTATGTACTCTCCCAAACGACTGGAAATGACTCAAACTCTGAAATCAACGTAGACCCTAATGTCCTTTTGCAATCAACACTGGAATCTCCGAGCAAAAACTCCATATTGAGCTTCAATGTCAATTCTTTGCCGAAGGACTTTCTGACATCTGCGGTGCTGGGAAAAGTTGATGAGCTGGTTGAAATTGAGGTGGACTTGAAGAAAGAGATCGGTGAAGGAAGCGATGTTGAGAATAATGATGAGCAGCCGATGGAAATTGATgaagaTTGCTCCTTAGCCGTAGCAACTAGTTCGAGTGATGGAAATATTAGCTTCGCCAAAGATTCTGATCAGACAGAAGCGGACAAATCCAAGGACTTCTTGGAGAATCTACTCCCCGAACTCTCCTCTGCCGAGGAGACAACTGATGACGTCATAGAAAACAAGTACATTGTCGGAAAATTGGAAATTTTGAACGACAGGGACATCGAGGATGACGGAcAGACAATAATGATGGACGGTGAGAACGGATCGATTATCCGATTAGTGTCCGGCCAGAAGTTGCTGTACGGGGACAGTGAGATATCGCTGGTCGTGCCGGAGGACTCGCAGGGCTGTGATACCAATGATAACGGGGATGGACAAGATTCTAATGACGAATCTCAAATCGAGCTGCAAGTGTCCGGAGACGAGGAAACGGCGAATGCTATCATAGCGGCCGCTCAGGAACAAGGTGGTGCTTTCATAAAAGTGGAATCTGGTGAGATGTACAGAGTGAAATCGGTTCAGAGCAAGAAGACAGAAGACACTGTGACCAATGTGGATGTGACTTCAATTAATACGATGGTGCAAAGAGAGGAAGACGGTCAATTTAAATGCCTACTCTGCGAAAATAATGAGAAGAAAGAAGACGCCCCGTTCATAAGCAACGCGGAAACTATGATGCAACACTTGAAAAGTACGCACGACGCCCGCGTGTACATCTGTCCGCAGTGcggggagctcgtgcggaaacGCAGCGAGTACGCCGCGCACATAGaacTTCACGCTATCAAGTCCAAGAAGATTTTGCCTACGGACAAATCGAAACTTCACGAATGTACTATATGTCATAAGAAATACAGTTCTCGTACGCTCCTAGCGGAGCATATGAATTTCCACAACGGCGCCAAGCCGTACACTTGCGAAGTGTGCAACAAGTCGTTCGCGTCTAAGTATACTCACCAGTCGCATCTAAAGACACACTTGGACAGACCGAGACCATTCAAATGCAAGCAATGTGGCAAGTCGTTCTTCACGCAACAGAATCTCAATCAACACGAGAAAACGCACTCCGGTGTGAAGGATTTTATTTGCACTGTGTGCGGCAAAGCGTTCGCCTCCCAGCACAACTTGGAGGTGCACGGCGTGGTCCACTCCGGGTCGAGGCCCTTCGTGTGCGCGCACTGCCCCAAGGGCTTCGCGCGCAGGGCCGAGCTGAGGGACCACATGCGGATACACACAGGCGAGCGACCATTCTCATGCGACATATGCGGTGCTACCTTCACGCAAAACTCGAACCTTCACTCACACAAGCGCGCCACGCATTTAGACGACAAACGTTACCAGTGCTCGCAGTGCCCTAAGAAGTTTAAGCGACGCAGGTAA
Protein Sequence: MNQLCFVCNVRMGIALRNGINLFGDDNTLQSGKKFTEVLSEILDKPVLEESAHSKVVCKKCHKFVSEYDSIQVRMQVIKLDLLSYFKSTLPRHKLNYDTYNTEPPSVQAKTPTKSAEGKPELRKLVLPASKLQPVPPDFVLKPGKWFTKANIANSKPIVTLPTSSSTLNLKVTVGTSVLTQSIKTTSAIGNKIISLSNNSTPQNYVLSQTTGNDSNSEINVDPNVLLQSTLESPSKNSILSFNVNSLPKDFLTSAVLGKVDELVEIEVDLKKEIGEGSDVENNDEQPMEIDEDCSLAVATSSSDGNISFAKDSDQTEADKSKDFLENLLPELSSAEETTDDVIENKYIVGKLEILNDRDIEDDGQTIMMDGENGSIIRLVSGQKLLYGDSEISLVVPEDSQGCDTNDNGDGQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKKTEDTVTNVDVTSINTMVQREEDGQFKCLLCENNEKKEDAPFISNAETMMQHLKSTHDARVYICPQCGELVRKRSEYAAHIELHAIKSKKILPTDKSKLHECTICHKKYSSRTLLAEHMNFHNGAKPYTCEVCNKSFASKYTHQSHLKTHLDRPRPFKCKQCGKSFFTQQNLNQHEKTHSGVKDFICTVCGKAFASQHNLEVHGVVHSGSRPFVCAHCPKGFARRAELRDHMRIHTGERPFSCDICGATFTQNSNLHSHKRATHLDDKRYQCSQCPKKFKRRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00288220;
90% Identity: iTF_00288220;
80% Identity: -