Ssim020744.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- Zfy1
- Assembly
- GCA_949699795.1
- Location
- OX453075.1:17779771-17785303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.6 6.9e+02 1.8 3.3 1 23 244 266 244 266 0.82 2 14 5.8 5.3e+02 2.2 0.2 6 23 278 296 278 296 0.90 3 14 0.38 35 5.9 0.0 2 23 305 327 304 327 0.94 4 14 7.6e-07 6.9e-05 23.8 0.8 2 23 354 375 354 375 0.97 5 14 6.4e-06 0.00058 20.9 2.8 1 23 382 405 382 405 0.97 6 14 1.5 1.3e+02 4.1 0.0 1 23 411 433 411 433 0.85 7 14 1.8e-06 0.00016 22.6 1.1 1 23 439 461 439 461 0.98 8 14 0.22 20 6.6 4.7 1 23 582 604 582 604 0.96 9 14 4.1e-05 0.0037 18.4 2.0 2 23 611 633 610 633 0.92 10 14 6.7e-06 0.00061 20.9 1.3 1 23 639 661 639 661 0.98 11 14 2.3e-06 0.00021 22.3 4.9 1 23 667 689 667 689 0.98 12 14 0.00011 0.0099 17.0 1.7 1 23 695 717 695 717 0.98 13 14 0.00066 0.06 14.6 2.1 1 23 723 745 723 745 0.93 14 14 0.18 16 6.9 3.4 1 23 751 774 751 774 0.88
Sequence Information
- Coding Sequence
- ATGAATTTCGACGAAGTTGATATGAGTTCTTTTCCGGCGTACGAGGTACCGCCGTTGAGGATTATATTCCCTCATGTGCCAAATCCTGACGAAGTCGCAGCGGTTCGCGATTTCTCTACAGTGTGTCGAATATGTGCCAAGGTGACATTCCACGTGTACCCCTTATTTGATGATGTGGGTGAAGAATTAGAGTTGCCTGACATAATTGAGACACATCTTCAGATgaaggtGAGGTCAGACGACGGGCTGCCGGGCGTGGTGTGCGCGTACTGCGCGCGCGCGCTGGCCGGCTGGGCCGCgctgcgccgcgccgcgcgcctcgCCGACACCGTGCTGCGCCGCCGCCTCGGCCTACTGCCGCCGCCGGAACCCAAACCAAGTGAAACTGCCGGCACCAAAAGTGAAGATGGCAAGTTACCACCAACGCTATTGCTAATTTCTTTAGTAAAAAATGTACTCACTAATTACTTCTATGCACTGAATATTGAAGAGGACAATTCAGACTTTGAATATGTTTGCCAAAAATGCAACGAAACGCCCGTCGGACGCAGCGTCGAGGACTTAACAGAGCATCTCAGGTTGAACCACGAGTCTGAAGTTCACAGTCAACAATCAATAGAGGATTTTATCAAAGGCAACATAACGTTCGAGGAAAGCCTAACGTCTGCCCAGTATGGTGACGACGAAGCTGAAACAGAGCAAAATAAAAACGAAGCAGCAATACCGACATATTGCTGTCCATACTGCGAAAGTATATTCTCATCCACCGCGCGACTCGTGTGCCATCTCGGGAAACACGTGGAAATGAGTATTGACAACGGAGTGATCTGTTGCGACGACATGTTCAACGATAGGAAATCTTTTGTGCAGCACTTGCAGGAGAAACACGTACATCGCGTCATTAACGCGATTACATGTCGAACGTGTGGGTTCTCCGCGGACGGTGAAGCCGAACTACAAGTGCATATAAACGAAACCCATCTTGAAACTATAAGCACGGGAGACAACGTCATCGAGAAAAAAGCGCTTAGCTCAAAATCTCAACGATATCTTCCTGCCGAATGTCCGAAGTGCAACAAAATtttctcaaataaatataacatgatCGTTCATATGAAAAGTCACAACAGGGAGCCTAGACGGTTTACGTGTGAGAAATGTAACAAAAGCTACAGGAGTCAGGGAAGCCTCACTCATCACAGGATGGTCGTACACGAGGGAGAACTGAGATTTGTGTGTGCATCGTGTGGAGAGGCCTTCCCCTCGGGGACGGCACGCGATGTCCACGCTCGCCTGCATACGGGAATCAAGCCTTATTCCTGTAATTACTGTGGAAAATCGTATAGAGCTAAAAACACTCTTAATAGACATATAGAAATGCATCTCGATGATCGTCTTTCGAGCGAGGACGGCAGAGGTGAACTAGACCCGAGGTCGCAATCGGATGATGATGTTCCACTTGCGGCCATCGCCAATAGCAAGAAAGCAGcactgtataataattttttcgAGGCCCTCGTTAATTTTAGGAACCACTTTATAAATGAACATGAATCACCAGAATATAATTACCCCGATTTCACGGACTCGAATTATTCCGATGAAGATGCACAAGAAAACAACAAATTAGACTTGAATTATTACGATGACCTCACACAGTGTAATATGAGGAAAGACAGAATGGACGAGGAGACCAGGCTCGAGCTGAGCGAAGTGCGAACGAAACTCGACGGAAAAGTATATTTTACCTGTAAAACGTGTGGAAAAAATCTAAGCTCATCGCACACCTACCTTTTTCATAAAAGGATTCACACGGGGGAGAGGCCGTGCGTGTGCCACATCTGCGGGAAACAGTTCCGCGCTCCGAGCGGCCTGCAGCGCCACCTCACGGAGACGCACGAGCGCGTGCGGCGCTACTCGTGCAACATGTGCCCCAAGAACTTCGTCAACTTGCAAAATCTGAAACAGCACTTTCGCATACACACCGGCGAGCGGCCGTTCGAGTGCCACCAATGCGGCAAGCGGTTCACGCAGAGCGGCACGCTGCACGTGCACCTGAAGACGCACAGCGAGCAGTTCCCGCACCAGTGCGCGGAGTGCGGGGCCAAGTTCCGGCTGCGGTCGGGGCTGACGCGCCACCGGCTGAAGCACACGGGCGAGCGGCCGCACGTGTGCGCGCACTGCGGCAAGGGCTTCCGGCAGCGGCACGAGCTCAGCGGCCACGCGCTGGCGCACACGGACGCCAAGCCGCACGCGTGCGCGGCGTGCGGCGCCGCCTTCCGCCAGCGCAAGGCGCTGCGCCACCACTGCAAGCGCGCGCACGCCGCCCACACCGCCCCCGCGCCCGCCGGGGAACACCATCCGCTCGCTTACGCACACGTTCAGCCTTACTAG
- Protein Sequence
- MNFDEVDMSSFPAYEVPPLRIIFPHVPNPDEVAAVRDFSTVCRICAKVTFHVYPLFDDVGEELELPDIIETHLQMKVRSDDGLPGVVCAYCARALAGWAALRRAARLADTVLRRRLGLLPPPEPKPSETAGTKSEDGKLPPTLLLISLVKNVLTNYFYALNIEEDNSDFEYVCQKCNETPVGRSVEDLTEHLRLNHESEVHSQQSIEDFIKGNITFEESLTSAQYGDDEAETEQNKNEAAIPTYCCPYCESIFSSTARLVCHLGKHVEMSIDNGVICCDDMFNDRKSFVQHLQEKHVHRVINAITCRTCGFSADGEAELQVHINETHLETISTGDNVIEKKALSSKSQRYLPAECPKCNKIFSNKYNMIVHMKSHNREPRRFTCEKCNKSYRSQGSLTHHRMVVHEGELRFVCASCGEAFPSGTARDVHARLHTGIKPYSCNYCGKSYRAKNTLNRHIEMHLDDRLSSEDGRGELDPRSQSDDDVPLAAIANSKKAALYNNFFEALVNFRNHFINEHESPEYNYPDFTDSNYSDEDAQENNKLDLNYYDDLTQCNMRKDRMDEETRLELSEVRTKLDGKVYFTCKTCGKNLSSSHTYLFHKRIHTGERPCVCHICGKQFRAPSGLQRHLTETHERVRRYSCNMCPKNFVNLQNLKQHFRIHTGERPFECHQCGKRFTQSGTLHVHLKTHSEQFPHQCAECGAKFRLRSGLTRHRLKHTGERPHVCAHCGKGFRQRHELSGHALAHTDAKPHACAACGAAFRQRKALRHHCKRAHAAHTAPAPAGEHHPLAYAHVQPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -