Ssim005102.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- L
- Assembly
- GCA_949699795.1
- Location
- OX453058.1:11461327-11466905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3 1.2e+02 4.2 4.8 1 23 3 25 3 25 0.97 2 17 7.6e-06 0.00069 20.7 4.1 1 23 31 53 31 53 0.99 3 17 1.6e-05 0.0014 19.7 0.1 1 23 59 81 59 81 0.98 4 17 0.0012 0.11 13.8 0.1 2 23 97 119 96 119 0.94 5 17 5.4 4.9e+02 2.3 0.1 9 23 150 165 146 165 0.93 6 17 0.27 25 6.4 0.0 3 23 221 241 220 241 0.97 7 17 0.12 11 7.4 0.0 2 23 255 276 254 276 0.91 8 17 0.0058 0.53 11.6 0.6 1 23 284 307 284 307 0.91 9 17 0.029 2.6 9.4 0.1 1 23 312 335 312 335 0.92 10 17 0.0076 0.69 11.2 0.2 1 23 395 419 395 420 0.95 11 17 0.00018 0.016 16.4 0.1 2 23 476 497 475 497 0.96 12 17 0.052 4.7 8.6 0.0 1 23 505 527 505 527 0.98 13 17 4.7 4.3e+02 2.4 0.7 2 23 535 556 534 557 0.91 14 17 8.6 7.8e+02 1.6 0.0 3 23 564 584 563 584 0.93 15 17 0.055 5 8.5 0.5 1 23 631 653 631 653 0.94 16 17 0.0021 0.19 13.0 0.1 1 20 661 680 661 683 0.95 17 17 0.13 12 7.4 0.3 1 23 690 712 690 712 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTCGTTGCGAGTTCTGTGCGCGACTGTTCAAGCACAAGCGGTCGCGCGACCGCCACGTCAAGTTGCACACGGGCGACCGCAAGTACCGTTGCGCACACTGCGAATCTGCCTTCTCCAGAAGcgaTCACCTAAAAATTCACATGAAAACGCACGACAACCAGAAGCCCTTCCAGTGCACGGTGTGCAACCGCGGGTACAACACGGCGGCGGCCCTCACGGCGCACATGCAGGGCCACAAGCGGGACCGCGAGGGCCGCGACGCGGACCGGAGACGGGCCCTGCGGTGCTTGCGCTGTGGGGACGCCTTCCGACGACCTGATATGCTGCAGgcTCATATGGTTAGTGCTCATGGCACTGACACCACCTCAATGACTCCTCCTCGACGAGTAGCTtctcaaccaccaccaacacttCTGGCCTGCATATACTGTACTCGCGATACCTTTACGAGTATGGAACAACTACAACTTCATGTGCGCGCAGCACATTCTGCTCTGTTAAACGGAGAAAATCCCGCCCAATCATCAGTTGATCAACCCGCCCCCACGGACTTGAGCCGAAGAGGTTCTGATGATGCCCCAACCGTGAAACGGCCTCGATTGAGTTCTGGTAACACAACACCGCAGACAGCTCTATCGCCGAGCACACTTTTATGCAACCAATGCGATGCCGCTCTGCCTGATTTTGAAGCTTTCCGCGCTCACTTAAAAGGGCATCTTGAAGAAGGAGGAGAATTGTCTCGCTCAAGCCCTACGCCGTGTCTGCATTGTGGAGCCACTTTCGCGGATGCAGCAGCATCTGAACGACACCTTGCTGCACATTACCTCGCCGTGTCCTGCGAATACACATGTCATAGCTGTGCGCGGAACTTCGCTGCACCGGACGACCTCCAGAAACACCTTTTTGACTTACACGCACATCATCTATATCGCTGCTCGCTCTGCAAGGAAATATTTGATTCAAAAGTGGCAATCCAGGTGCATTTCGCAGTAGCGCACAGCGGCGAGAGCAAAGTATGGTTGTGTCGTTCGTGCGGCGCGAGTGGGGGTGCTCTGCGATCGGAAGCAGAGGGCGCGGCGCATGTGCGCGCTCGGCACGCCTCAGCACGTTGCGCGTGCGGCGCCGTGCTACCTGGTGCACGGGCCCTGCGTGCACACGCCGCCACGCATCACGCCTACCGCTGCCCCGTGCCTACCTGCGCCGATTCTTTCGCCGTGCAGTACCTGCTTGAAAGACACATGCAAGCACATCATACTGCCGCACAACAGgCTTTGAACGGAGAAATGGTCAGAGCGAAACGAACGGAAAACAACAATGCCGTGGATGGGGACGGTGCATGTTCGCCTTGTATCACAGGCTCAGAGGGCAACAGTGCTCCAAGTGAGGAGCGGCGGCGTAAGAACGGGGCGGTGGCGCTACAGTGCGCGTACTGTGGCGAGCGCACGCGCAGCCGCGCTGAGCTCGAAGCGCACACCCGAGCGCACTCGGGCGCGGCAGCCGCAAGACACAAGTGCCTTATTTGTGACGAAGTGCTGCCATCCGCTGCTGTTCTTGCCGAACACAAGTTGACGCATTGTAAGGTCGTAGCGGGTGACACTTGTGCGAGATGTAGGTCTAGATTACCTTCTGAAGAAGCTTTTTTAAACCATATGGCGCGCCATCATCCTACTCTTCCTGCGCCATGCGTTATTTGCCGCCAAACTCTTGCTTCCGAAGCTGAAGCacgacttcatgctcgtttccATCTCAGACCCTCTGAAGACGAACAAAGATGTGCTATATGTCTTAGAGCGTTATCGGAAAGTGAGGCAGGAGAAGGAGCCAGAGCTTGTTCGTCTTGCTACGCCCGCCACGCCGCACCGCGGCCCCCGCCGTCCACTGATCACGATTGCAGGCTTTGTCGACGAACACTCGGTTCACCGACCAGTCTGCAGGCTCATCTCATTGAGCATACATTTGCTGGTATAGGAGCATTCACGTGTTACTTATGCCAAGCCGTATTCACGAGCGCCGCTGGCCTGCAGCGACATCTACCGGAGCACGCCGCTGCACCCAGACCTTATGATTGCGGTAGGTGTGGAGTAAAGTTCTTTTTCCGTGCTGAGTTAGACAATCACGCATTTGTTCATCTCGAGGAAGCGGAGTTAGCACAGAGAGCTTTTTATGAGGCCTATGCGAGAGGCGCAGCGTCCGCTTGGGCAGCTCTGGCTCCACCGGAGCCTGCGTCCCAACCTCCGGTGTCCACACCAACTCCTACATTAACCGATTTCCCAGTGAAGCGAGAACCCGAAATAAAAGAGGAGCGAAACACAGATGAATATATTGAAGTGTCTTCGCCTCCGCCCCCGCAACCCCCGAGTGCTCCCTCCCCAGCGCCCGTGGTGAAGGTAGAGAAGGTCGAAGAAGAGTGA
- Protein Sequence
- MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKRDREGRDADRRRALRCLRCGDAFRRPDMLQAHMVSAHGTDTTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGENPAQSSVDQPAPTDLSRRGSDDAPTVKRPRLSSGNTTPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRSSPTPCLHCGATFADAAASERHLAAHYLAVSCEYTCHSCARNFAAPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWLCRSCGASGGALRSEAEGAAHVRARHASARCACGAVLPGARALRAHAATHHAYRCPVPTCADSFAVQYLLERHMQAHHTAAQQALNGEMVRAKRTENNNAVDGDGACSPCITGSEGNSAPSEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEEAFLNHMARHHPTLPAPCVICRQTLASEAEARLHARFHLRPSEDEQRCAICLRALSESEAGEGARACSSCYARHAAPRPPPSTDHDCRLCRRTLGSPTSLQAHLIEHTFAGIGAFTCYLCQAVFTSAAGLQRHLPEHAAAPRPYDCGRCGVKFFFRAELDNHAFVHLEEAELAQRAFYEAYARGAASAWAALAPPEPASQPPVSTPTPTLTDFPVKREPEIKEERNTDEYIEVSSPPPPQPPSAPSPAPVVKVEKVEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01438254;
- 80% Identity
- -