Ssim027694.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453087.1:3548867-3558682[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0063 0.58 11.5 0.4 8 23 17 32 10 32 0.86 2 21 0.11 10 7.5 1.2 1 23 108 131 108 131 0.92 3 21 3.4 3.1e+02 2.9 0.0 2 23 158 180 157 180 0.92 4 21 0.01 0.95 10.8 1.8 2 23 203 224 202 224 0.97 5 21 0.81 74 4.9 0.0 1 23 228 250 228 250 0.86 6 21 3.5 3.2e+02 2.9 3.3 1 23 255 278 255 278 0.92 7 21 0.065 5.9 8.3 0.6 2 23 286 308 286 308 0.92 8 21 6.3e-05 0.0057 17.8 1.2 2 23 316 338 315 338 0.96 9 21 0.00089 0.081 14.2 1.2 1 23 344 366 344 366 0.97 10 21 1.7e-05 0.0016 19.5 1.7 1 23 372 394 372 394 0.98 11 21 0.0017 0.15 13.3 3.0 1 23 400 423 400 423 0.98 12 21 0.023 2.1 9.7 0.4 1 23 1662 1685 1662 1686 0.94 13 21 0.98 90 4.6 0.0 2 23 1712 1734 1711 1734 0.91 14 21 5.4 4.9e+02 2.3 3.5 2 23 1760 1782 1759 1782 0.95 15 21 0.11 10 7.6 0.7 1 23 1786 1808 1786 1808 0.96 16 21 0.001 0.093 14.0 2.4 1 23 1813 1835 1813 1835 0.98 17 21 0.37 34 5.9 0.1 3 23 1843 1864 1843 1864 0.94 18 21 0.0056 0.51 11.7 0.1 2 23 1872 1894 1871 1894 0.96 19 21 2.8e-05 0.0025 18.9 0.1 1 23 1900 1922 1900 1922 0.97 20 21 0.66 60 5.1 1.7 2 23 1923 1950 1922 1950 0.86 21 21 0.00052 0.048 14.9 3.6 1 23 1955 1978 1955 1979 0.94
Sequence Information
- Coding Sequence
- ATGCTTAAGCATACTGGCGAGAGGGCGTATAAATGCGACAAGTTCGCGAAAACATACGCGAGGAAATCAGCATTACGTGAACATATGAGAACGCACGAGACTGGCAGTGCTAAGTGTGCGCTACGTAAAAACTCGAAAACTAGCAAACAAGAGCCTAAGACTTCCAGATTGCTAAAAAGGAAGCTGATCGCCAAAGGCGAATCTGTAAGCGCCCATTATGAGATGAAAGCAACAAAGGAGTTAGAGAAACATCGTTTTAATATACGACAAATACTCCAATGCTCGAATGCAACCCCTATACGTTGTCGAGGAGGCATAGGATACGCATGTTGCTTTTGCACTAGTCAGTTCCCAGATCCTGCGGATTTGAAGAAACACACCCTTGGATTTCACGACGAAAAGTCTAGGCGATATTTCATGCAAGGAAAGATGATGTTTTCTTATCTCGTTAAACTGGACATAACATCGCTCGAATGTAAACTTTGCGATAGCACCATTGACACAGTAGAGCAGTTGATCGAACATCTAATAGAATCACACCAGAAGAATATGTTCACCGACATCAAGAATCATATAATGCCGTTCAAATTTACCGACGAATTGCTTAGATGTGTTGTTTGTTCGACTGTCTTTCATAAATTCAAAGCTTTACAGGAACACATGAACACGCATTACAGGAACTATGTGTGTGATGTTTGCGATGCTGGTTTCGTTAATAGGAACATTCTCTTAAGCCATGCGGAGGGTCATAAAACTGGGACTTTTAATTGTGACTTTTGTACCAAAGTGTACACGTCGTTTAGAAGGAAGAAGTCTCACGAAAAGTCCGTTCACATTTACGCGAACATGTTGAATCGATGCGGCTACTGTAACGAGAAATTCAAGGACTATCGtttgaaagaaaaacatttggCGCTAGTACACGGTGTTCAAGCGATGTCGTTGAAATGTCAGGCATGTGATAAATCTTTTACGACTAAAACGGCGCTGACAGTCCACACGAAGAGAGACCATCTGATGGAGAGACGACACGAGTGCAACGTTTGCGATATGAAGTTCTTCATGCCTTATGAGTTGAAAGAGCATATGGTAAAGCACACGGGTGTGAGGAAGTTCGAGTGTGAGGTGTGCCACAAAGCGTACGGGCGGAGGAAGACGCTGAGAGAGCATATGCGGATACACGTGGACGACCGCCGGTTCAAGTGTGAACACTGCGGGATAGCGTTCGTTCAGAAGTGCAGTTGGCGTGGGCATGTGAGGTCTAAGCACGGGAGCCGGCCTGTGAATGATAAAGAACAAGAAGTAATAATCAACGAAGACCTAACAGTTGATATAGAAAGAGAGGATTCAGAAAATGACGATGTTTTGTTACATACCGAAAATGACCCTCTCGCAACGGTTGCTGTGGCTAATGAGAATACAAGTCAAAATAGTATTGAGAATATTCTCGAGATCTTAGAGCAAAATAATGACAACCCCGATAATGCAGAAACtggacaaaataatattaatgatataaacaAGTTAAATACTAGACAGAGTCAAAATAACGATACATCTTCTACACAGAAGATAACGGATATAAATATCGTAAGTTTAGAACCAAAAGAAAAAGAACATATTGACAATAAAGCTAGTGAACTAAAGAAGAAAGAAGCTGACAGCAAATGTAAGCAGAAGAAAGaagataatataaatgaaaaagttcAAGGCGCTAAACATTCCAAGGTAGAAAACAATATCGAAGTCAAAAAGGGAGTTGCAAGACACGACATAAGCAGTGAAGTATGTGTGGAAAACATAATCGATACTGAGAGGCCAAGACGAAAAAGGTATGATTTAGAACTCGAAGTGCCAAATGAAGATGATATATACAATGATAatgacgatgatgatgatttTACGCTTACTAAAAAGAAGTTACGTTCCCGCCTAAACGATAAAGGGAGATGTAAGATAAAACAAAGGAGACATAGCGTTTTTGAGAAGATCGTACCGAAGACTGTGTTTGAAGATAGTAATAAGTTATCAAAACGCCGCAAAAGTGTTGATTGTGGCCAAATACACAACTCAACACAAATCTATAAAGGAAAAGAGAGTAAAGAAAAGAGTGATGTCGATACAAACACTAAGCAAGATCTAAACAATgttaataagaatgaaacaaaacaaaagttaaAAGAATATGATCTTTTTAAGGGTcccttaaaagaaaaaaagaattttAGAGAAGAACGAGAAGCTGAATTAAATCTCATGAAACTGCGAGAAGCTGCACTGAATGCTGTTAAAAACCGGAAAGTCGTGGTGAATGTTGCGAAAATACAAGAGTCGGAATTGAATCTTATGAGAAACCGAGAGCTTGAAGTTAATAACATGAAAAACGATGCGACTGGACGAGAAAAATCTGCCTTCAGTGCGGTCGAGAAAAGTATTTCTTTTGATTCTATTAAACAAGGTCTTTGTTCCCAAAATATTATCAATGataagaataaattaaacaaaagtgaTGACACTGGcaataaagatattaatattgGTGGTAATGATGGAGGCAGTAAGCATTCTGGTCCGAGGAGAAAAGTTAAGAAAAGTGTTTCTTTTCACCCGGATATCGTTACTAGGAGTCAACACCGCAAGAAACTAGAAAAGGAACATTCTGAACACAAAGCCGCTAATGATTGTCACGACAGCAATAACAAGGTCTCAATAGAAAATAAAGGTACAAATGTTCATAACAGTAAGAGTAATAACGATAATAAGCAAAATAAGGATAATGATAATCGACACAAATCAAAAGGAAAAGATGGAAGGAATTGTAGAAAAAGTTCCGgagaaattaaacaaaatacagTTGATAATCAAAACAAGGAATCTATAGAAAAAAGTGGAAGGAATAACGAAAGTAAGAGTTCCAGAGAAAATAAACCATATAAAGCTGATGACAATCAGTACAAGGGATCTAGAGAAAAAAGTGGAACGGATTATCACAGTAAGAGTTCCagagaaaataaacaaaatcggactgataattatcaaaataaaagatTCAAAGAATCTAATAAACAGAGTAAATCTAGTGATAATGCAGACAAAAGTTTTGGAGAAGATAAAAGTTTAAGAGATTATCGAAGTAAAAGTTACAGAGAAAATAAAGAAAGTAAGGCCGATGATAAACAAAACAAGGGATATGGAGAACATAGACATTTAACCGACGGTCAAAGTAAGTGTGCTAGAGAAAATAAACAGAACAAAACTGACGATAATCAAAGTAAGAGATCCGAAGAAAATCAAAGTACAACGGACTGTCACCGTCAGAGTTATGTAGATAGTAAAAGAGACGTTGATACCAACAGTCGTAAGAGAAAATTACTCGAAAATTATACAACTAGTGAAGCTGTTTTAAGTGTAAACAGTGATACTGATAAAGAATCAGAGCACGGGAAAACAAGTAATGTTCCTAAAACCAAGCACAGGCGAACGTTGCTCGACGACCTTaagattaaagaagttggaaAAAAGTATAAGAATGGTTGTAATAATGAAGAAGACGTACAGCTTCCAATTATGGAGAAAGATGAGACTGCTATTAACAAGACTCGTACACGAACCTTAGTTGATGACCTTAAATACAAGCGTCTGATAGATTTTGTAAATGATAAGCATAATAGTGAAAATTTAGAAGAAGAAAGCGGTGCTAATAGTTTCTCCCCGCCTCTTCCCCCTGAGCGTAGGTTACTTGATgaacttaaaagtaaaaacggAAAAGAAAAGActgaaaatttcaaaaatgaCGCGATGAGCAGAGGATCCAGACATAGTTTATTAGATGATCTTAAATATAAGAGTAAAGAAAACCCGCAAAAGGATATTTTTGATGATCAGGTTAGAGTAGAAAATGAAACACCCGAAAATTTGGAATATAGTAGTAGTTTTATTGATTATTCTAACGAACAACAGCATGAAAACATTCTTGATGATTCATTTAGATCTGAGAATCCCGAGAATCCTGGAAACAATAGATTAAGTGCCAACTTACTTGACGATCATAACGAAATTAGGAGCTTGGACGACAACGAAGAAGACTGCATTGTAGAAGAGACTTACCAGAATAGAAAAGATTGTGATCTTATTGTATTTAAGGACCAAGATCGGGAAGCAAAAAGTAGTCAACGTAGTGATAATAAGGGATTTAAGGAGAAGAGAGGCACTATTGACAATAAAGATTGTAGTGGTGTTTTCGATGAGCCTAAAAACAAGAATTCAAAAGAAAGAAAGACTGATATCAGTGATAACAGTGATAAGCTGAAGAGAGATTTAGATAATAAGAGTTCGGAAGATAAGCCAAATAGACGCCAAAGAAGTGATAGTGATAAACATTCTAAACATAGGAGAGGTGAAAGTAGTGATAAAAAGTATTCGGACCGTAAGTCATCACATAGTACTAAAAATAAGACTTTTgaagataataaaaacaaaaatattgacaataaaGGTCGGGTTGACCGTGATTTGGAAGGAAAGAAAAAAGATAGCGTTAGTTCTAAATATGGAAACGTCAAAGATGTCGATAAAGATAGTTATAAGGAAGTAGTGAAAAGAAAGAGAAGTGAAGATTATACTGGAGATAAGAACAAGCCAAGTTCTAGTCATTCTAACAGTGACGGTTCCGCATCAAACTCAAAAAGAGCGAAAATAGACAAAGAAAAGAGTACCAAAAGTTCTTCACATAGTAAATTTGATGATTTGCTTAATAGTGATACTGAACAGAAGAATGATGGGGAAAACTTTAGAGCTCGCATATTAGAGGCACGTGCCCTTGAATCTGAAGATGATGAAGTGGAGACGCTAAATAGAAGACCGTCAACCACATCGCGGGGACTGAAGCCTCAGCAAATGGAATTCCGCAAACACGttgataatataaaaacgatCATGCGTTGGACGAACGCAACACTGATCCGTAGATTCGATGGCATCGGATATGAGTGTGCTTTCTGCGAGGTGGAATACCGCAACCCGGGCGATCTTAGGTCGCACACGCTCGAGAACCATCACAGTTTTTGCAATGCGTATTTCACTAAAAAAGGCGATGTAACTACCTTCTTCGTGAATATGGATATAACTGACTTAGAATGTTATATATGCGGTAAGAAAGTATATAACGTCCAAGCTGCTATTAACCATCTGTCGATGGACCACAAGAAAAAGTTCCACAGTGATATCAAGAACCACATAGTGCCGTTCAAATTTGATTATACCTACACGGACACGTTGACTTGTTGCATGTGTACCAGCAGGTACACCAGGTTTAAGATGCTTCTAGAACATACAATCACTAACCATTGCAGGAATTACATTTGCAAAGAGTGTGACATGGGTTTCATCAACACTAGAAGACTACAGTTTCATCTAAAGATTCATAACAAAAACAAGTTTAAGTGCGACCACTGTGATAAAACGTTCGATACGCTCGCGAAAAAGACAGCACACGAAAAGATACATCAGCAAGCGAAAACTCTTTGGTGCGTGCAATGTGGTGAGCCGTTCTTCGACTACGCGAAGAAGCAACGCCACATGGCGGAGGTCCACGGCGTGGATACTCCAAAGATCGTCTGCGAGGCGTGCGATCGAGTGTTCACAGCGCGAGCTGATTACTTCGCTCACTTGAGACGCGACCACGTACAGGAGCGGAGCTACGACTGTGCGGAATGCGGGAAGAAGTTCTTCCAAAACGCAGCGCTGCAGTCTCACATGTTGGAGCATAAATGCGAGCAGGAATACCAGTTCGATGTGTGCTATAAAATGTTTTCGAGGGAGGAAAATCCCACACAACACACGCGCAGTCACGATGAAAAGCGATTCACGTGCGAACGGTGCGGGAAACGGTTCCACAAGAAAAGCTCGTGGAGAGCCCACATGATAGATATTCATCATGAGAACATTTAA
- Protein Sequence
- MLKHTGERAYKCDKFAKTYARKSALREHMRTHETGSAKCALRKNSKTSKQEPKTSRLLKRKLIAKGESVSAHYEMKATKELEKHRFNIRQILQCSNATPIRCRGGIGYACCFCTSQFPDPADLKKHTLGFHDEKSRRYFMQGKMMFSYLVKLDITSLECKLCDSTIDTVEQLIEHLIESHQKNMFTDIKNHIMPFKFTDELLRCVVCSTVFHKFKALQEHMNTHYRNYVCDVCDAGFVNRNILLSHAEGHKTGTFNCDFCTKVYTSFRRKKSHEKSVHIYANMLNRCGYCNEKFKDYRLKEKHLALVHGVQAMSLKCQACDKSFTTKTALTVHTKRDHLMERRHECNVCDMKFFMPYELKEHMVKHTGVRKFECEVCHKAYGRRKTLREHMRIHVDDRRFKCEHCGIAFVQKCSWRGHVRSKHGSRPVNDKEQEVIINEDLTVDIEREDSENDDVLLHTENDPLATVAVANENTSQNSIENILEILEQNNDNPDNAETGQNNINDINKLNTRQSQNNDTSSTQKITDINIVSLEPKEKEHIDNKASELKKKEADSKCKQKKEDNINEKVQGAKHSKVENNIEVKKGVARHDISSEVCVENIIDTERPRRKRYDLELEVPNEDDIYNDNDDDDDFTLTKKKLRSRLNDKGRCKIKQRRHSVFEKIVPKTVFEDSNKLSKRRKSVDCGQIHNSTQIYKGKESKEKSDVDTNTKQDLNNVNKNETKQKLKEYDLFKGPLKEKKNFREEREAELNLMKLREAALNAVKNRKVVVNVAKIQESELNLMRNRELEVNNMKNDATGREKSAFSAVEKSISFDSIKQGLCSQNIINDKNKLNKSDDTGNKDINIGGNDGGSKHSGPRRKVKKSVSFHPDIVTRSQHRKKLEKEHSEHKAANDCHDSNNKVSIENKGTNVHNSKSNNDNKQNKDNDNRHKSKGKDGRNCRKSSGEIKQNTVDNQNKESIEKSGRNNESKSSRENKPYKADDNQYKGSREKSGTDYHSKSSRENKQNRTDNYQNKRFKESNKQSKSSDNADKSFGEDKSLRDYRSKSYRENKESKADDKQNKGYGEHRHLTDGQSKCARENKQNKTDDNQSKRSEENQSTTDCHRQSYVDSKRDVDTNSRKRKLLENYTTSEAVLSVNSDTDKESEHGKTSNVPKTKHRRTLLDDLKIKEVGKKYKNGCNNEEDVQLPIMEKDETAINKTRTRTLVDDLKYKRLIDFVNDKHNSENLEEESGANSFSPPLPPERRLLDELKSKNGKEKTENFKNDAMSRGSRHSLLDDLKYKSKENPQKDIFDDQVRVENETPENLEYSSSFIDYSNEQQHENILDDSFRSENPENPGNNRLSANLLDDHNEIRSLDDNEEDCIVEETYQNRKDCDLIVFKDQDREAKSSQRSDNKGFKEKRGTIDNKDCSGVFDEPKNKNSKERKTDISDNSDKLKRDLDNKSSEDKPNRRQRSDSDKHSKHRRGESSDKKYSDRKSSHSTKNKTFEDNKNKNIDNKGRVDRDLEGKKKDSVSSKYGNVKDVDKDSYKEVVKRKRSEDYTGDKNKPSSSHSNSDGSASNSKRAKIDKEKSTKSSSHSKFDDLLNSDTEQKNDGENFRARILEARALESEDDEVETLNRRPSTTSRGLKPQQMEFRKHVDNIKTIMRWTNATLIRRFDGIGYECAFCEVEYRNPGDLRSHTLENHHSFCNAYFTKKGDVTTFFVNMDITDLECYICGKKVYNVQAAINHLSMDHKKKFHSDIKNHIVPFKFDYTYTDTLTCCMCTSRYTRFKMLLEHTITNHCRNYICKECDMGFINTRRLQFHLKIHNKNKFKCDHCDKTFDTLAKKTAHEKIHQQAKTLWCVQCGEPFFDYAKKQRHMAEVHGVDTPKIVCEACDRVFTARADYFAHLRRDHVQERSYDCAECGKKFFQNAALQSHMLEHKCEQEYQFDVCYKMFSREENPTQHTRSHDEKRFTCERCGKRFHKKSSWRAHMIDIHHENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -