Basic Information

Insect: Spicauda simplicius
Gene Symbol: -
Assembly: GCA_949699795.1
Location: OX453073.1:7113359-7125989[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.084 7.6 8.0 0.8 1 21 6 27 6 28 0.87

2 12 0.0055 0.5 11.7 0.6 2 21 34 53 33 54 0.94

3 12 0.15 14 7.2 0.4 1 12 201 212 201 221 0.84

4 12 2.3e-05 0.0021 19.2 2.4 1 23 383 405 383 405 0.99

5 12 2.7e-05 0.0025 18.9 0.6 1 23 419 441 419 441 0.98

6 12 3.4e-06 0.00031 21.8 2.2 3 23 494 514 492 514 0.97

7 12 0.00086 0.078 14.2 1.9 1 23 530 552 530 552 0.98

8 12 1.4e-06 0.00013 23.0 4.5 1 23 558 580 558 580 0.98

9 12 0.0036 0.33 12.3 6.4 1 23 586 608 586 608 0.97

10 12 8.8e-06 0.0008 20.5 0.4 1 23 614 636 614 636 0.98

11 12 0.001 0.093 14.0 0.2 1 23 640 662 640 662 0.96

12 12 0.00071 0.065 14.5 0.1 1 23 670 693 670 693 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.084	7.6	8.0	0.8	1	21	6	27	6	28	0.87
2	12	0.0055	0.5	11.7	0.6	2	21	34	53	33	54	0.94
3	12	0.15	14	7.2	0.4	1	12	201	212	201	221	0.84
4	12	2.3e-05	0.0021	19.2	2.4	1	23	383	405	383	405	0.99
5	12	2.7e-05	0.0025	18.9	0.6	1	23	419	441	419	441	0.98
6	12	3.4e-06	0.00031	21.8	2.2	3	23	494	514	492	514	0.97
7	12	0.00086	0.078	14.2	1.9	1	23	530	552	530	552	0.98
8	12	1.4e-06	0.00013	23.0	4.5	1	23	558	580	558	580	0.98
9	12	0.0036	0.33	12.3	6.4	1	23	586	608	586	608	0.97
10	12	8.8e-06	0.0008	20.5	0.4	1	23	614	636	614	636	0.98
11	12	0.001	0.093	14.0	0.2	1	23	640	662	640	662	0.96
12	12	0.00071	0.065	14.5	0.1	1	23	670	693	670	693	0.96

Sequence Information

Coding Sequence: atgggagatatgttttttaattgtcCTCTGTGTTGTAATAAAGCATTTGATTCTAAGAGATCTCTTGCTGAACATTTATCCAGTGTACTGTTAAACGTAACTTGTCCAGTTTGTAATAAACAATGCACATCAATCGAACACCTTGTGGACCACTTGAATTCTGATAATTGTGAAACGACTGAAAAGTTCACCAATAAttctgaaatagcaaatgatgAGAATGTTATATCCACAGAGGAAACTGAAAAGTTGTTATCTGCTAGTGTAAGTCAAAACGGTGATAATGAAGGCCATGTACCGGCCAACGGCATAAAACTGTCATCTGAAAATaatgaagtaaataaaatgtatgtggaGTTACTTGGCAAACAATTGATGAAACCTATGCCGACTCAAGAACTGAAGCTGGTGTTAGAGGACGGAGAGAGCAGATATGTACTCTTGGCTAACAACGACTCTGTTCAAAGCATATGTACAGAAAATACTGTAGTTACTAAGCAAAACAATGATGGAACAATATCTTTAACAACTGTTAAAGATCCAAAACAAGAACAAATTGCTGCACCTGAGACAGAGCCTGAAGAAAATCCATTGGAAATATATAGTTGCAACACTTGTGGAGTATCATTCACATCAGTCATTGAACACATTAGGAATTATCATAATGATCAAGATGTTGTGGTTGAGGAACCAATTGATGAAGCAACCAATGCAGAAACAATACCAGTTGAATGTGAACCCACTATCAATGCAGAGATACAAAGTGCTGCGGCGGATCGGTTAACACTGCGCCGGATGATCACTGACAATGGTGACATCATTGAAACACCTATAATTAAGGATGCACCAGAATCTGCTGAACAAATGGCGCAAATTGGTTCTATGAAAACAGAAATTTTGAAAACTGATCCATTAGAACAAAACAGGGTATATTATACTAAAAGATTTGTTCAAATAGACAAATTTTGCAACAGTATGATTAAGAATATTAAAGAAGAAGAAAAAGGAGGTCCATATCACAAGGTTGTAGTAAAGGAATTGGTAACAAGTGGGGGGAACAAGGtcaaaatttacaattgtatttCATGTAATCTATATGTGCCAACATTAGCAGAATTTAAGTCACGACCCTGTAAAATACttaaatatcAATGTACACATTGTCCAGTAGCATACGAGAACTCTAAATCACTATGTGCACACATGAAAGTACACAAATCTAAACCAGATTTGGTATTTGATTCGCCCATTACATTTGAATGTGCGATTTGTAGCACAGTATTTCCTACAAGTAAATCACTAAAACTGCATAAGAGAATGCATGATCCTATCAAATCCCGTCCAATAGAGCCACCGGTAGAAACAAAGGAAGGCCAAGTGAACGAAGTAAAGTACTTATGTGTTATATGCAATAAGCTGATACCCGTGGAATACAGAGTTATACACCAGAATTCACACAAGAACACTAACAAGATGAACTGCCACATTTGCAATAAGAAGTTCAGTTCTAGAGAGTACTTGGAAATGCATATGAATGTTCATAATTTAGATAAGgtaattgtaggTAAACAGGATAAATCACTCCCGTACACTTGTGTTTATTGCAATAGGCAGTTTGCGAGGCCACACGAAAAAGTTAAACACGAAAGAATACACACAGgtGAAAAGCCCCACTCGTGCGAGATCTGCGGGAAGTCGTTCCGCGTGTCGTACTGTCTCACGCTGCACATGCGCACGCACACCGGCGCGCGGCCCTACGCCTGCCAGCACTGCGGGAAGAGGTTCAAAGCGCACAGTGTGTACAACCATCATCTGTTAACGCACTCTGAAGTACGCGCGTACAAGTGCCCGTTTTGTCCGAAGGCCTTCAAAACATCCGTCCAACTTGCCGGTCATAAGAATTCACATACGAAACCCTTCTCATGCCAACAGTGTAATCGTCCGTTCGCGTCGCTATACGCGGTGCGCGTCCACATGGACGACCACGCGAAGAAGAACAGCCTGAAGTTCTCGTGCCGGCTGTGCGGCGCGAGCTACGCGCGGGCCTTCGCGCTCAAGGACCACGTGCGGCAGGCCCACCAGGCGCATATGGACGCTGCTAATGCACTGtCGGGTCTCAAAGAAGAAGAGTGGCTGATACAAGACTGTGACGAAGAAGAAGAAAGCATTCAGCCGTTACATCGAGACTTAAATAATGACatcAATGAATTGGAAATGAACACAGATGAACTGATAGTACCTTAG
Protein Sequence: MGDMFFNCPLCCNKAFDSKRSLAEHLSSVLLNVTCPVCNKQCTSIEHLVDHLNSDNCETTEKFTNNSEIANDENVISTEETEKLLSASVSQNGDNEGHVPANGIKLSSENNEVNKMYVELLGKQLMKPMPTQELKLVLEDGESRYVLLANNDSVQSICTENTVVTKQNNDGTISLTTVKDPKQEQIAAPETEPEENPLEIYSCNTCGVSFTSVIEHIRNYHNDQDVVVEEPIDEATNAETIPVECEPTINAEIQSAAADRLTLRRMITDNGDIIETPIIKDAPESAEQMAQIGSMKTEILKTDPLEQNRVYYTKRFVQIDKFCNSMIKNIKEEEKGGPYHKVVVKELVTSGGNKVKIYNCISCNLYVPTLAEFKSRPCKILKYQCTHCPVAYENSKSLCAHMKVHKSKPDLVFDSPITFECAICSTVFPTSKSLKLHKRMHDPIKSRPIEPPVETKEGQVNEVKYLCVICNKLIPVEYRVIHQNSHKNTNKMNCHICNKKFSSREYLEMHMNVHNLDKVIVGKQDKSLPYTCVYCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMDDHAKKNSLKFSCRLCGASYARAFALKDHVRQAHQAHMDAANALSGLKEEEWLIQDCDEEEESIQPLHRDLNNDINELEMNTDELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00288297;
90% Identity: -
80% Identity: -