Ssim027701.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453087.1:3616269-3633328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 9.7 7.6 1.8 1 23 240 263 240 263 0.90 2 19 0.14 13 7.3 0.0 3 23 290 311 288 311 0.96 3 19 0.0031 0.29 12.5 0.6 2 23 333 354 332 354 0.96 4 19 0.89 81 4.7 3.3 2 23 359 380 358 380 0.94 5 19 0.0097 0.88 10.9 0.7 1 19 384 402 384 407 0.81 6 19 0.062 5.7 8.4 5.0 2 23 414 436 413 436 0.97 7 19 0.0014 0.13 13.5 0.1 3 23 445 466 443 466 0.94 8 19 8.9e-05 0.0081 17.3 5.2 1 23 472 494 472 494 0.97 9 19 0.00092 0.084 14.1 3.0 1 23 499 521 499 521 0.98 10 19 0.28 26 6.3 1.4 1 23 571 594 571 594 0.92 11 19 0.11 9.7 7.6 0.1 3 23 621 642 620 642 0.95 12 19 0.034 3.1 9.2 0.2 2 23 664 685 663 685 0.96 13 19 0.34 31 6.1 2.6 1 23 689 711 689 711 0.96 14 19 0.059 5.3 8.5 0.6 1 23 715 738 715 738 0.87 15 19 0.072 6.6 8.2 5.1 1 23 744 767 744 767 0.98 16 19 0.00014 0.012 16.7 0.2 3 23 776 797 774 797 0.94 17 19 4.5e-05 0.0041 18.2 0.9 1 23 803 825 803 825 0.97 18 19 3.6e-07 3.3e-05 24.9 1.9 1 23 831 853 831 853 0.98 19 19 0.015 1.4 10.3 0.0 1 23 859 882 859 882 0.96
Sequence Information
- Coding Sequence
- ATGGATTTCGATCAAGTAGTAGTTAAACCGAGCCCGGGTTTGTGCCGGTGCTGCCTTTCTGAAGGATGTTATAAAGACTTAGGAACAGAGTACCCTTGGATGGAGGATACAGAAATTTACGCCGATATGTTGTTAGAATGCTTTGATATTAGCATATCACAGCACAATGACGGTCCCAACGGCCCGAAGCGTCTCATATGCGAGGTATGCATCACGAGGCTGCGGGATGCATGCAACTTTAAGAAGCAAGTGCTGGATTCGGAGAAGAAGTTTGTTGATATGATCGGCAGAGGGGAGTTTAGGCCAAAAGCCACGCCAATATTATTCGAGGAACAAATGAAGTCGGAGATAAGCGTGGAGGCGATTGACATGGATGATGTGGAATACCTGGAGGAAGATGACCATTTTGATAATGACACCTTCAAAGAGGAGTCAACAAGCGCCAGACCAGACGTGCTAGACACTGCGGCGAAGGTCAAACGCGGTAGACCGAAGAAGACCACCGTGAAGCCAGAGAAGAAAGCCAAGGTCCCCAAAACTGAGGAGAAACCGCGTACTTCGAAGATGACTAAAGGTCAGAAACTCGGGATAGCGCCGAAGGAGGCACTGAGTAAGTCCTCGATATCCAGCATAACACGTAACAGACTAATTAAGCGTAATGCCACGACAATTCTAGAATGTTCCACAGTGATGCCATTCAAATGGCAACGGCATACCTATTTTTGCTTCTTCTGTCGTAAAGAATTCAAGGACGTCAAAGATTTGAAAGGGCATGTGTATGAAAATCATGGAAATTCAAACGTTAAAAAGGCCGTTTCTTACCTTAGAGGGGGCAAAAAGGTGAAAATTGACGTAACGTGTATTGCGTGTAAAATTTGTCAAGCCAAAGTTACAGACATTGACGAATTGATGGGTCATCTTAAGATTGATCATGATAAACACTTCGATCCGGTCAGCGAAGGCGTAATACCGTTTAAACTGGAGAGCGATAGGCTTCAATGCGCGCTATGCGACAAGGAATTCCAATATTTCAACAAACTAAATGAACACATGAACGAGCATTACGGGAAGTCCGTTTGCGATTTGTGCGGTAAACATTTTCTCAGTCAGGATAGATTACGCTGTCATATGATTAATCATGGCTCCGGGTATAAATGCAACGTGTGTCCTAAGACTTTCGATTCTCGCACGAAGAGGGATAGCCACGAAGCGCAGGTCCACGATAAGGACAAAGGAATCAAGTGCCGGTTTTGCAAAGAAATATTCAAGAATTACATGCAACGTAGGCGACATCACAGGACCGTCCACAACGTTCAAGCGCCCGCAATAAACTGTCCAGTTTGTGATAAATCTTTCGAGATTCTCAGCAAAATGCGCTTGCATATAAAAGAAGTGCACGTCAGAGAAAGGAATCACTCGTGTCCGACGTGCGGAAAGAAGTTCTTCTCCAAGGCGCAGGTGCATCGGCACATGATGAAACATTGTGACGAAACGCATCAGTGCGACATTTGCAAGAAGTCGTACGCGTGGAAACATACGCTGAGCGCACATATGAAAATACATAGCAGTAAGACGCGCGAGATATTGCTGACGGAGGCACTGAGTAAGTCCTCGATATCCATCAGGACACGTAACAGCCTGATAAGGCGTAACGCCACGACGATTCTAGAATGTTCCACGGTGACACCGTTTAAATGGCGTCGGGATATCTACCTTTGCTTCTTCTGCCTCACAGAATTCAAGAATATCGAAGATTTGAAATCGCATACGTATAAGGACCATGATCGTTCTGAAGTTAAATCAGTCGTTTCTATCATGAAACGGGACGAGAAGGTTAAAATTGATGTGTCGTCTGTTGCATGTAATATTTGTCATGCCAAAGTTACAAACATCGCCGGATTAATCGATCATCTCAGAGCTGAACATGGTAAAGAACTCAGGCCGGTCAGCGAAGGTGTATTACCATATAGATTGGAGGGAGATAGGATTCAATGTGCCTTATGTGACCAGGAATTTCAGTATTTCATCAAACTAAATGAACATATGAACGAGCATTACGGTATTTACGCTTGCGAGCTGTGCGGTAAACATCTTCTCAGTCAGCAGAGACTACGCTCCCATATGATCCATCATGGCCCCGGCTATAAATGCAATACATGTCCTGAGACTTTCCAATCTCTCGTGAAAAAGAAAGCCCATGAAGTGAAAGTCCACAACAAGGCCGAAGGATACAAATGCTTGTATTGCTCAGAAAGATTCATGAATTATACGCTTCGGAAGCGACATCACAACACGGTCCACAAGGTCCAATTGCCCGAAATAAACTGTCCCATTTGTGGCAAAGGTTTCGAGCACCTCAGCAGAATGAGGGCGCATATAAAAGAAATTCATGATGGAGAAAGAAATTTCCAGTGCTCGGCTTGCGATAAGAAGTTCTTTTCCAAAGCACAGTTGAATAGGCACGCGATAATGCATTATGGTCAGAGGAAGTATCAGTGCGACATTTGCAAGAAGTCTTACACGAGGAAAGAAACGCTGAGGAATCATATGACTGTACATGGGGATGAAAGGGAGTTCGTGTGTCCCGTTTGCGCCCTAGAATTTGTTCAGATAGCGAGTGTAAAAAGACATTTGAAGTTAAGTCATCCCGAAGCTGTGCATCTTcttctttaa
- Protein Sequence
- MDFDQVVVKPSPGLCRCCLSEGCYKDLGTEYPWMEDTEIYADMLLECFDISISQHNDGPNGPKRLICEVCITRLRDACNFKKQVLDSEKKFVDMIGRGEFRPKATPILFEEQMKSEISVEAIDMDDVEYLEEDDHFDNDTFKEESTSARPDVLDTAAKVKRGRPKKTTVKPEKKAKVPKTEEKPRTSKMTKGQKLGIAPKEALSKSSISSITRNRLIKRNATTILECSTVMPFKWQRHTYFCFFCRKEFKDVKDLKGHVYENHGNSNVKKAVSYLRGGKKVKIDVTCIACKICQAKVTDIDELMGHLKIDHDKHFDPVSEGVIPFKLESDRLQCALCDKEFQYFNKLNEHMNEHYGKSVCDLCGKHFLSQDRLRCHMINHGSGYKCNVCPKTFDSRTKRDSHEAQVHDKDKGIKCRFCKEIFKNYMQRRRHHRTVHNVQAPAINCPVCDKSFEILSKMRLHIKEVHVRERNHSCPTCGKKFFSKAQVHRHMMKHCDETHQCDICKKSYAWKHTLSAHMKIHSSKTREILLTEALSKSSISIRTRNSLIRRNATTILECSTVTPFKWRRDIYLCFFCLTEFKNIEDLKSHTYKDHDRSEVKSVVSIMKRDEKVKIDVSSVACNICHAKVTNIAGLIDHLRAEHGKELRPVSEGVLPYRLEGDRIQCALCDQEFQYFIKLNEHMNEHYGIYACELCGKHLLSQQRLRSHMIHHGPGYKCNTCPETFQSLVKKKAHEVKVHNKAEGYKCLYCSERFMNYTLRKRHHNTVHKVQLPEINCPICGKGFEHLSRMRAHIKEIHDGERNFQCSACDKKFFSKAQLNRHAIMHYGQRKYQCDICKKSYTRKETLRNHMTVHGDEREFVCPVCALEFVQIASVKRHLKLSHPEAVHLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -