Ssim024213.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453081.1:2805349-2822876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3e-05 0.0021 19.2 1.6 1 23 226 248 226 248 0.99 2 11 0.0047 0.43 11.9 1.9 1 23 255 277 255 277 0.98 3 11 0.68 62 5.1 2.2 1 23 281 303 281 308 0.92 4 11 1.2e-06 0.00011 23.2 4.3 1 23 310 333 310 333 0.95 5 11 0.00052 0.048 14.9 0.9 2 23 340 362 340 362 0.95 6 11 4.6e-05 0.0042 18.2 0.1 1 23 375 397 375 397 0.96 7 11 6.5e-05 0.0059 17.8 0.2 1 21 403 423 403 428 0.93 8 11 3.6e-05 0.0033 18.6 0.6 1 23 436 459 436 459 0.97 9 11 5.7e-05 0.0052 17.9 0.6 1 23 465 488 465 488 0.96 10 11 3.5e-07 3.2e-05 24.9 0.4 1 23 497 519 497 519 0.98 11 11 0.11 9.8 7.6 0.0 1 23 525 548 525 548 0.94
Sequence Information
- Coding Sequence
- ATGGAAATTGAGaagcatacagacaaatatCCATGTTGTGTAGCTTGTTTATCAAGTAGTAATGACGGTGCGTTGCAGGACTATAAGATAAATAATGGGACATTGAAAGCGATTATTCagaTGGATGTGATAGTACTTTgttatatttgtaaacatttggCTCAGAAGACAGAGctatttattcaaaatgtaCAGAGTAACCAAATGCTTCTGGAAAATATTCACAATataACAGACTCAATTCTGCAAACAGCAAGAGCTCAGTCACAACTGTTTTGTCTTACAAACACAACATTGGACTCAATTGAAGTTGGGAACAATAAAACAAAGGAAGTGCCAATCAAAGTTGAAGTCAAAGATGAGGAGGGATTTTTGGACCATTTGGAGGGAGAATTTgtagatgatgatgatgataatgATTTCCAAGATTCTGTTGTAAAAGATGAAGATGATGATTTTCcgttaaaagatttattaaaggAGGAATTTGCTTCGGATagttatgaaattaatttaagaagATCACTGAGAAGAAGCAAGGCAGAGAAGAAGGGTAATAGGAAAAAGAAGCATTCTAGAAAATCAGATTTGTTCAAAATTGTGTATATAACAAGGGAAGAATGTATGGAGGAGAGATTAAAGAAAGCAGAAGATAAGAAATACATAGATTATACGTATAAATGCGAAGATTGCGTTAAAGGATTTAATTATAAAGAGAGTTATGATAGACATATGAAAAGTCATAATGAGTTAATGGGTGATTACGAATGCGACATATGCAAGCAGAGAATGAACTCCAAGGAAAAGTTGTTACGGCACAAGAAAAGTCATGAAATaCGATATAAATGCTTGGAGTGTGGATTAACTCGAATAAATCGATTAACAATAAGGGACCATTATAACGCTCATCATCTGAAGTTGCATTCATATAATTGTCCACATTGCCCTAAAACATTTAAACGGCAAGTGTCACTAAGAAAACACATACACTACATCCATCAGAACAAAGTACGCGCTAAATGTCAACTATGTCAAAAGACATACGCTAATAAGGAGGTGCTGAAGTCACATATGATTTTGAGGCATCCAAACGAAGTTTCAGCGGGGGATGTTCTCAAACGGTACATATGCCAAGAGTGCGGCATGGCGTTCAAGGCACCATCACAACTACGGAACCACAACATCAAGCACTCACACAAACGGGATTATTATTGTGTTGAGTGTGATAAAAGCTTTAAATCGGAAGCAGCATTCAAACAACACGTGAAGATTACAGCGcctcataataattatttagaattaCCGTTCCCCTGTACAAGTTGTGATAAACGCTTCGCAGTTCGCCGTGATCTTGAGAGACATACGAACAGGGTCCATTTGAATATACGGCCGTTTCAGTGTGATAAATGTGATAGGGCATACGTGAATAATTGGTCATTGAACGAACACAAGCGATTCGTTCACGAAGGGCAGAAACGACCGTTGAAGTACCCCTGCTCTATGTGTGATAAGGCGTTTGATCGTAACCAGACGTTAAAAGCGCACGTACGTACGCATACGGGTGAGCGGCCGTTCCCGTGTGCACGTTGCCCGGCACGCTTCGCGCAAAGTAGTGCACGGGGTACCCACGTGCGGCTCGTGCATCTACGTTTACCCAGGGCTGGGGGACGGGGCACTGGTACCTAG
- Protein Sequence
- MEIEKHTDKYPCCVACLSSSNDGALQDYKINNGTLKAIIQMDVIVLCYICKHLAQKTELFIQNVQSNQMLLENIHNITDSILQTARAQSQLFCLTNTTLDSIEVGNNKTKEVPIKVEVKDEEGFLDHLEGEFVDDDDDNDFQDSVVKDEDDDFPLKDLLKEEFASDSYEINLRRSLRRSKAEKKGNRKKKHSRKSDLFKIVYITREECMEERLKKAEDKKYIDYTYKCEDCVKGFNYKESYDRHMKSHNELMGDYECDICKQRMNSKEKLLRHKKSHEIRYKCLECGLTRINRLTIRDHYNAHHLKLHSYNCPHCPKTFKRQVSLRKHIHYIHQNKVRAKCQLCQKTYANKEVLKSHMILRHPNEVSAGDVLKRYICQECGMAFKAPSQLRNHNIKHSHKRDYYCVECDKSFKSEAAFKQHVKITAPHNNYLELPFPCTSCDKRFAVRRDLERHTNRVHLNIRPFQCDKCDRAYVNNWSLNEHKRFVHEGQKRPLKYPCSMCDKAFDRNQTLKAHVRTHTGERPFPCARCPARFAQSSARGTHVRLVHLRLPRAGGRGTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288241;
- 90% Identity
- iTF_00288241;
- 80% Identity
- -