Basic Information

Insect: Spicauda simplicius
Gene Symbol: -
Assembly: GCA_949699795.1
Location: OX453087.1:3653098-3654933[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.54 49 5.4 2.8 1 23 44 66 44 66 0.95

2 16 0.087 7.9 7.9 0.0 3 23 95 116 93 116 0.90

3 16 0.0003 0.027 15.7 0.3 2 23 137 159 136 159 0.97

4 16 0.0015 0.14 13.4 1.2 1 23 164 187 164 187 0.94

5 16 0.13 12 7.3 0.5 1 23 192 215 192 215 0.95

6 16 0.00014 0.013 16.7 1.9 2 23 218 240 218 240 0.96

7 16 0.013 1.2 10.5 0.1 2 21 244 263 243 264 0.96

8 16 0.0063 0.57 11.5 1.6 1 21 319 339 319 342 0.89

9 16 0.052 4.7 8.6 0.1 3 23 371 392 369 392 0.91

10 16 1.8e-05 0.0016 19.5 0.3 2 23 415 437 414 437 0.96

11 16 0.00031 0.029 15.6 0.0 3 23 444 465 443 465 0.92

12 16 0.003 0.27 12.5 2.9 2 23 470 492 469 492 0.93

13 16 0.001 0.093 14.0 2.7 1 23 497 520 497 520 0.95

14 16 3.8e-05 0.0034 18.5 6.0 1 23 524 547 524 547 0.97

15 16 0.00024 0.022 15.9 0.8 2 23 554 575 553 575 0.96

16 16 0.0014 0.13 13.6 3.5 1 23 581 603 581 603 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.54	49	5.4	2.8	1	23	44	66	44	66	0.95
2	16	0.087	7.9	7.9	0.0	3	23	95	116	93	116	0.90
3	16	0.0003	0.027	15.7	0.3	2	23	137	159	136	159	0.97
4	16	0.0015	0.14	13.4	1.2	1	23	164	187	164	187	0.94
5	16	0.13	12	7.3	0.5	1	23	192	215	192	215	0.95
6	16	0.00014	0.013	16.7	1.9	2	23	218	240	218	240	0.96
7	16	0.013	1.2	10.5	0.1	2	21	244	263	243	264	0.96
8	16	0.0063	0.57	11.5	1.6	1	21	319	339	319	342	0.89
9	16	0.052	4.7	8.6	0.1	3	23	371	392	369	392	0.91
10	16	1.8e-05	0.0016	19.5	0.3	2	23	415	437	414	437	0.96
11	16	0.00031	0.029	15.6	0.0	3	23	444	465	443	465	0.92
12	16	0.003	0.27	12.5	2.9	2	23	470	492	469	492	0.93
13	16	0.001	0.093	14.0	2.7	1	23	497	520	497	520	0.95
14	16	3.8e-05	0.0034	18.5	6.0	1	23	524	547	524	547	0.97
15	16	0.00024	0.022	15.9	0.8	2	23	554	575	553	575	0.96
16	16	0.0014	0.13	13.6	3.5	1	23	581	603	581	603	0.97

Sequence Information

Coding Sequence: ATGAAGAAACATTTCTTTCCAGATGAAGTCGCGCAAATCAAGTACCAGCTCAGCTCTGAGAGAAGGAGGAATAATTTGAAAATCCTCTTCAGCAGTACATCGATAATACCGTTTAAATGGCGCGGCAAGTACTTATGCTTTTATTGTTGCAAGGAGTACGCTGATTATGCTGAGTTCAGAAAACATACGATATCTCACAGTTTGTGCATAAATCAAGAATATGATATCAAGTTCATCAAACGGACGAACGAAGAGATAAAACTTGATATATCAGAAATTAACTGTGAACTTTGTAACGAACCGTTCACATCAGTGGATGAAATAGTCAATCATCTAATAGGGAAACATGATTTGGAATACGATAAGGACGTTGATATGCCGTTCCAGGAATATATGCTACAAGATTCGAGATGTCAGCACTGTGGAATACAGTTTGCGTATTTCGGTTATCTAATAATTCACATAAATACTGCTCACCCTCAAAATTGCTTCGTGTGCAATGATTGTGGATTGACCTTCAATAAAAAGAGAAGTTTGGGCTTCCATATAAGATATAATCATCGAACAGGCGGCTATTTGTGTGATGAGTGTCCGGATCTCTTCGAATCTCAAAAATTGCTGGATAAACACAAAAACACGTTTCACTTTAGGAAATGCAATACTTGCAACTTGAGTTTTGTTTCGTACAGTCTCCTGAAGAAACATAAGCAATCAGAACATACTGATAACAAATGTCCATATTGTGAACAAGCGTATCAGTCACGACAAGGTTTAGTACAGCACTTGCGTGCTTGCAAAGACAACGTTGTCGTTAAAAGCGAAAATATTACAACTCTTCACTCTCAGAACttattagaacttaaaaaacCGCAGAAGAATCTAACGCAAAAACGACAAAATATCGTTTGCATTCTAAACATGTCAACGGCGATTCCTTTTAAGTTTTTCTCGAAGTTCTTCTGTTTTTATTGCTCGAAAAAGTTTACGGAATTCGATGAACTGAAAGAGCACACAGTAGCAGAGCATCCCGTTTGTGACTTGAAGTCGAACTGTATAAAGAAGTGTAAAGGAGAACGCGCTGTTGTTAGGATAGATGTGACGTCACTAGCTTGTAAGGAATGCGATGATACCTTTGAAGACTTCGACTTGTTGATAGATCATTTAATTGGCAAACACAAAGCGGATTACGACAAAGCAGTAACAGGGTGTtttgaaacttttaaaataattaaagataatatcCCATGCCCCCACTGTCCAAAGATATTTAGGTATTTTGCTACATTAGTTAGGCATATCAACTCTGAACACTGCAACAATAATAGGATATGTGATTTTTGCGGCCGTTCATTCCGAAGCGCTGCTAATCTGGGCGTTCATGTGATCTACGCGCATACAGGCTCTTGCGAATGCGACGTTTGTGGTATGAAGTTCAGAAACCAGTGGTGCTTGGGACGTCACAAGGCGAAAGTTCATGATGTGAAGGATTTCAAGTGTCCCAAATGCCCGGAGCAGTTCCAGTCGCAGTATCACAAGCAGAAACATTTGATCCAAGTCCACGATATTGGCCACAAGTGCACTCACTGCGGACGAATGTTCACGAGGAATTCGTTCATGAAAGACCACGTCAGAAGGATACATCTGAAGGAGAAAAACGTGCCTTGTTCGGTTTGCGATGAAAAGTTCTTCGACAATCATTTGCTGAAGTTGCACATGGTCAAGCATAACGGTGACAGGAAATTTACTTGTAACGTATGTGACAAAACTTTCTTGAGGCGAAGCAATCTGAGTTGTCACATGGATATGCATAAGAAATACGGTCATGTTGAAGCGTAG
Protein Sequence: MKKHFFPDEVAQIKYQLSSERRRNNLKILFSSTSIIPFKWRGKYLCFYCCKEYADYAEFRKHTISHSLCINQEYDIKFIKRTNEEIKLDISEINCELCNEPFTSVDEIVNHLIGKHDLEYDKDVDMPFQEYMLQDSRCQHCGIQFAYFGYLIIHINTAHPQNCFVCNDCGLTFNKKRSLGFHIRYNHRTGGYLCDECPDLFESQKLLDKHKNTFHFRKCNTCNLSFVSYSLLKKHKQSEHTDNKCPYCEQAYQSRQGLVQHLRACKDNVVVKSENITTLHSQNLLELKKPQKNLTQKRQNIVCILNMSTAIPFKFFSKFFCFYCSKKFTEFDELKEHTVAEHPVCDLKSNCIKKCKGERAVVRIDVTSLACKECDDTFEDFDLLIDHLIGKHKADYDKAVTGCFETFKIIKDNIPCPHCPKIFRYFATLVRHINSEHCNNNRICDFCGRSFRSAANLGVHVIYAHTGSCECDVCGMKFRNQWCLGRHKAKVHDVKDFKCPKCPEQFQSQYHKQKHLIQVHDIGHKCTHCGRMFTRNSFMKDHVRRIHLKEKNVPCSVCDEKFFDNHLLKLHMVKHNGDRKFTCNVCDKTFLRRSNLSCHMDMHKKYGHVEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -