Ssim025976.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453084.1:3985950-4004321[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00043 0.039 15.2 1.4 1 23 171 194 171 194 0.98 2 13 3.5e-05 0.0032 18.6 1.2 1 23 198 220 198 220 0.99 3 13 9.3e-05 0.0085 17.3 0.7 2 23 228 249 227 249 0.96 4 13 6.4e-05 0.0059 17.8 1.3 1 23 255 277 255 277 0.97 5 13 1.5e-05 0.0014 19.7 0.8 1 23 284 307 284 308 0.95 6 13 2.5e-05 0.0023 19.0 2.5 1 23 313 335 313 335 0.97 7 13 0.00017 0.016 16.4 1.3 1 23 341 364 341 364 0.95 8 13 4.4e-05 0.004 18.3 2.1 2 23 375 396 374 396 0.96 9 13 1.8e-05 0.0016 19.5 4.7 1 23 402 424 402 424 0.97 10 13 0.00098 0.089 14.0 1.0 1 23 430 453 430 453 0.92 11 13 1.2 1.1e+02 4.3 0.3 3 23 465 482 463 482 0.71 12 13 8.9e-05 0.0081 17.3 1.8 1 23 487 510 487 510 0.95 13 13 8.1e-05 0.0074 17.4 3.3 1 23 516 539 516 539 0.96
Sequence Information
- Coding Sequence
- ATGTcggaaatattaaatttgcGTACGCTCTGCCGCTGTTGCCACAGGGATGGGAGTTTTAAAAGCTTGCAAGTGTACTACGTTATCGAAAAAGAAGTTGAGGTTTACTCGACGATGTTACGAGGAACTTTTGATATTAGTATGACCATACCTCCAGTAGACGGCAGCAACAGTATTTGTGATGTGTGCATCCAGAGGCTACGAGACGCTGCCAAGTTCAAACAACAAGTTCTGCTTTGTGAGAAGAAGTTTCATGAATATTGCAAAAATTACACAAAACAGACGATTCCAATAGAATACAATCCCGAAGAAACAACAGTTGAAGAATCGACTAACAAAAAGACAATGCGTGTCAAAGATTATAATGATGACGATCGTAATAGGGATTTCGATGATAACTCAGGATTGGACGACCCTAATGACGatAAATTCAAGCGAGATGAAACTAAGCTTGAGAAAAAAGTGGACCCTGAGAGTGAAAGTTTAATAACGACAGAAAAGGGCACATTTTACAAATGCAATCTTTGTGATAACATGTACAGTGCGGTCTCTTCCTTGAGAAAACATCTGAAAAGACGCCACgatattacttacaaatgttcCGCTTGTGACGAGGTCTTCTCTGATCGGTCCAAGTATTCAGCACACAAGAAAACAcattcaaaacaaacaaaactttGGTCCTGCCAATTTTGTCCGAAAACATTCAAAACCGCTGGGAACCGTAACCAACACGAAAGAATACACACAAAGAAGGTCCAGTTTCAGTGTGATTTATGTAAAAAGTTCTTCCCGTACAAACTGACCTTGACCAGGCATATTCTTGGGCACTATGGCAGGAATAAGAATTTCGTTTGCGACGTTTGCGGGCTGACTTTCTACGATAAGACGAATATGAGAAAACACGTGCTGATCGTACATCATAAGATAAGGCCGTTCAAATGTACGGTTTGCCCGAAAACGTTTACGTTGAAGAAATACTTGACAGTGCATTTCAGAGATCACACAGGCGAAAGACCTTTCAGCTGCGAGGTGTGTTTACTTTCCTTCAATTCGACCAGAAATTTAGAACGCCATATGCAGTTTCGTCACAGTGGAAACTCATCAGATCCGAAGAaatgtgtgtgcaaaatttgcAGCGAAGAATTCGACACGCGTGGCAAGTTGCAATCGCACATGAGGAACCATAATGGCCAGAAGGAGTTCAAATGCCACATTTGTGTGAAGGACTTTTGCTCGAGTTCCTCGTTGAAACGTCATATAGACGAGCACAGCGgtattaaacaatatttgtgTGAGATTTGCAACATTAGGTTCACGCAGAAAACGCCGTTGATGCGACATAACTCGCGGTTTCACGACCCGAACAAAATCGTGCGTGAGAAAGTCAAGTGTGACTTgtgtaatgtttattataagGATTTAGAAAAACATATGAACGCGCATAATAAAAGGCCCTTTGCTTGTGAGTGGTGTAGCAAGCGTTATCCGCAGAAAAATACGCTAAATAGACATATAAAACACGTTCATATAGGGATAAAGGAACACGCGTGCACCATGTGTGACAAGAAATATTTCAAGAATGCAGATTTAAAGATTCATATGCGaaaaaagcataaataa
- Protein Sequence
- MSEILNLRTLCRCCHRDGSFKSLQVYYVIEKEVEVYSTMLRGTFDISMTIPPVDGSNSICDVCIQRLRDAAKFKQQVLLCEKKFHEYCKNYTKQTIPIEYNPEETTVEESTNKKTMRVKDYNDDDRNRDFDDNSGLDDPNDDKFKRDETKLEKKVDPESESLITTEKGTFYKCNLCDNMYSAVSSLRKHLKRRHDITYKCSACDEVFSDRSKYSAHKKTHSKQTKLWSCQFCPKTFKTAGNRNQHERIHTKKVQFQCDLCKKFFPYKLTLTRHILGHYGRNKNFVCDVCGLTFYDKTNMRKHVLIVHHKIRPFKCTVCPKTFTLKKYLTVHFRDHTGERPFSCEVCLLSFNSTRNLERHMQFRHSGNSSDPKKCVCKICSEEFDTRGKLQSHMRNHNGQKEFKCHICVKDFCSSSSLKRHIDEHSGIKQYLCEICNIRFTQKTPLMRHNSRFHDPNKIVREKVKCDLCNVYYKDLEKHMNAHNKRPFACEWCSKRYPQKNTLNRHIKHVHIGIKEHACTMCDKKYFKNADLKIHMRKKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -