Ssim025977.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- Znf131
- Assembly
- GCA_949699795.1
- Location
- OX453084.1:4005196-4024154[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0056 0.51 11.7 1.0 1 23 169 192 169 192 0.98 2 21 0.00036 0.033 15.4 1.7 1 23 196 218 196 218 0.98 3 21 0.62 56 5.2 2.2 2 23 224 245 223 245 0.89 4 21 9.4e-05 0.0086 17.2 2.1 2 23 252 273 251 273 0.97 5 21 2e-05 0.0018 19.4 0.3 1 23 280 303 280 303 0.97 6 21 1.6e-05 0.0015 19.6 1.4 1 23 309 331 309 331 0.97 7 21 0.00045 0.041 15.1 1.2 1 23 337 360 337 360 0.96 8 21 0.00061 0.055 14.7 1.9 2 23 371 392 370 392 0.96 9 21 0.012 1.1 10.7 1.0 1 23 651 674 651 674 0.94 10 21 0.0038 0.35 12.2 4.6 1 23 678 700 678 700 0.98 11 21 0.00062 0.057 14.7 2.5 1 23 705 727 705 727 0.98 12 21 0.0079 0.72 11.2 2.0 1 23 733 755 733 755 0.96 13 21 0.05 4.6 8.7 4.6 1 23 762 785 762 785 0.94 14 21 7e-06 0.00064 20.8 1.4 1 23 791 813 791 813 0.98 15 21 0.0066 0.6 11.4 1.1 1 21 819 839 819 840 0.96 16 21 0.048 4.4 8.7 0.1 1 23 856 879 856 879 0.97 17 21 5.4e-05 0.0049 18.0 2.9 1 23 885 907 885 907 0.96 18 21 0.0092 0.84 11.0 0.4 1 20 912 931 912 932 0.95 19 21 2 1.9e+02 3.6 0.9 2 23 949 967 948 967 0.77 20 21 0.0012 0.11 13.8 1.2 1 23 972 995 972 995 0.95 21 21 0.0073 0.67 11.3 5.2 1 23 1001 1024 1001 1024 0.93
Sequence Information
- Coding Sequence
- ATGTcggaaatattaaatttgcGTACGCTCTGCCGCTGTTGCCACAGAGATGGGAGTTTTAAAAGCTTGCAAGTGTACTACGTTATCGAAAATGAAGTTGAGGTTTACTCGACGATGTTACGAGAAACTTTTGATATTAGCATGACCATACCTCCAGTAGACGGCAGCAACAGTATTTGTGATGTGTGCATCCAGAGGCTACGAGACGCTGCCGAGTTCAAACAACAAGTTCTGCTTTGTGAGAAGAAGTTTCATGAATATTGCACAAATGAACCGGACGAATCAATTGAAGTGGATGTGAACGTCGAAAgagaTAATTCAAAACAATCAATTCCAGTAGGGAATAATCCCGAAGACACGAAAGTTAAAGAATCGACTAAAATGCTCCAGAAAAAGATAAAACGTGTCAGAGatAAAGTCAAGCGAAATGAAACTAAGTATgagaaaaaagtaaaattggACCCCGAGAGGGAAAGTTTAGTATATACGGAAAAGGGCACATATTACAAATGCAATTTTTGTGATTTGATGTACAATGCTATAGCGACCTTGAGAAAACACCTACAAAGACGCCACAAAGTCACTCACAAATGTCCGTTCTGTGACTTGGTCTTCGCCATTCGGTCCCAGTATTCTGCGCACAGAAAAACACATGCTATAGAACGTTTGTCGTGCAGATTTTGTCCAAAAACATTCAAAACCATTGGGGGCTGTAAGTCACACGAACAAATACACACAGAGAAGGTCCCGTTGCAGTGcgatttatgtaaaaagttCTTCTCGTACAAACTGACGTTGACCAGGCATATTCTTAGGCACTACGGCGGGAATAAGACTTTTTCTTGTGACATTTGCGGGCGGAATTTCAAATATAAGGCTAACGTGAGAATCCACGTGTTGACCGTACATAGTGAGATGAGGCCGTTCAAATGTACGGTCTGCCCGAAAACGTTTAAGTTGAAGAGTGGTTTGACAGTGCATTTCAGAGATCATACGGGCGAAATGCCTTACAGCTGCAAGGAGTGTTCACTGTCGTTTAAGGCACAGAATAGTTTAACATACCATATGCAAGCGTATCACAGTGGAAACTCATCAGATCGGAAGAAATGTGTTTGCGTAATTTGCAGGCAAGAATTCGACACGCGTGGCAAGTTGCAATCTCACATGAGGAACCATGTTGGCCAAGTTGTCGCAGTTGATGAGACATATCTCGCGCTTCTACGACCCAAACAGAATAATGTTCCTGATGATAATGATCTTAATAGAGATTTCGATGATAACTCCGGATTGGACGAACCTTGTAATGACATAGTGCCTCCGAATGATGataattctattaaaaataataaaaagttaccTAAGAAGCGCGGAAGACCTAAAAAGATTGTTAGAGGAAGACCTAAGACTTCGACGCTATCCCGTTCTCAACAAATCAAAGAAGCAGCGGCTCGTTATCGCCAGAAAATTCGCGAAAAAGGTAAGAAGACATTAGCTAGTTACAATTCTTTGTGTCCGGAAGTTCTCAGAGCAGCTGTAGCGCGTTACACTACGTTTCATCCCGAGGTTACCCGAGAAGCAGTGTCACGTTACTCTGCTTATCATCCCGAGGTTAACCGAGAAGCAGTGTCACGTTACTCTGCTTCTCATCCCAAGGTTAGCCGAGAAGCAGTGTCACGTTACTCTGCTTCTCATCCCGAGGTTAACCAAGAAGCAGTGTCACGTTACTCTGCTTCTCATCCCGAGGTTAACCGAGAAGCAGTGTCACGTTACTCTGCTTCTCATCCTGATGTTAACCGAGAAGCTGTGGCACgtCAGAAGCAAGATGAAAAGAACAATCTAAAAGAAAAGGATACAATTATAGatACAATCACGAATAATGAAAGGATTGGTAATAGAATTACATTGGATCCAGAGACAGAAACATGGATAAAGACTGATAAGGGCTACTTATACAAATGCAAACTTTGTGGTGTCGCCTACAAGGCGCTCGCGCGTCTGAGACGTCATTTACACGAAACCCACAAAGTCTCATTCAAATGTTCGCATTGCGACCAGATATTTTTCAATCGAAGTAAATACTTATTGCACCTGAATCAGCATTCTATAAAAACGTACACCTGTCGGTATTGTCCCAAAACATACGACAGGTTCTATCTATTTAAGGCACACGAGAACTCGCATACGAAAAAAAATCGATTCCAGTGCGATATATGTAAGAAGTTCTACGCGTGCAAATCGTCTCTACGGATCCACGTCTTAGGGCACTACGACAGGAGAAAGAAGCACGTTTGTGACTACTGTGGTCACGTTTTTCACAATTTCACTTACTTTCGTATGCACGTTGCGAGCGTGCACCAGAAATTGAGGATGTTCAAGTGTAAGCTGTGTCCGAAAACCTTCACGGCGAACAAAAGTTTAAAAGAGCATATCCGAGATCATACAGGGGAGCGGCCGTACAGCTGCGACCGGTGCACATCTACCTTCAAAACAAGTGTTCTGCTACGCACCCATAAACGGTTATGTGGCCTTGAAACGCAACTTTCTCACGATACGGGTCCGAAGAGATATACTTGCAAAATTTGCTTGCTGGAAATAGGCACACTAGGGCAGCTGCGGTCCCATATGATAAGAAATCATACCGGCGACAAAGAACACAAGTGTCATATTTGCGTGAAGGAATTCATTTCGAAATATGCACTAAAACGTCACATAGACGAACACAACGGTATCAAATATTCGTGCGATATTTGCAACATTAACTTTGCCAAATACGAGCAGATGCGGCGACATAAATCATGTTTTCACGCCCCGAACAGGAAAACCGAGAAAGACCGGCAGAAAATTCAATGTCATATGTGTGGCCTTTACTTTAAAGAGATAGAAAAACATATGGCCGTTCATAAAAGAAAACCGTTTGCCTGCCAATTGTGCAACAAAACTTTCTTAAATCCGGTTGCGCTAAACAAGCATATAAAACACAGTCACGACAGGATAAAATTTCACGCGTGTAACATGTGTGATAAGAAATATTGCCATAAGACAGGTCTGGACCGTCACATAgtaaaagtacataaataa
- Protein Sequence
- MSEILNLRTLCRCCHRDGSFKSLQVYYVIENEVEVYSTMLRETFDISMTIPPVDGSNSICDVCIQRLRDAAEFKQQVLLCEKKFHEYCTNEPDESIEVDVNVERDNSKQSIPVGNNPEDTKVKESTKMLQKKIKRVRDKVKRNETKYEKKVKLDPERESLVYTEKGTYYKCNFCDLMYNAIATLRKHLQRRHKVTHKCPFCDLVFAIRSQYSAHRKTHAIERLSCRFCPKTFKTIGGCKSHEQIHTEKVPLQCDLCKKFFSYKLTLTRHILRHYGGNKTFSCDICGRNFKYKANVRIHVLTVHSEMRPFKCTVCPKTFKLKSGLTVHFRDHTGEMPYSCKECSLSFKAQNSLTYHMQAYHSGNSSDRKKCVCVICRQEFDTRGKLQSHMRNHVGQVVAVDETYLALLRPKQNNVPDDNDLNRDFDDNSGLDEPCNDIVPPNDDNSIKNNKKLPKKRGRPKKIVRGRPKTSTLSRSQQIKEAAARYRQKIREKGKKTLASYNSLCPEVLRAAVARYTTFHPEVTREAVSRYSAYHPEVNREAVSRYSASHPKVSREAVSRYSASHPEVNQEAVSRYSASHPEVNREAVSRYSASHPDVNREAVARQKQDEKNNLKEKDTIIDTITNNERIGNRITLDPETETWIKTDKGYLYKCKLCGVAYKALARLRRHLHETHKVSFKCSHCDQIFFNRSKYLLHLNQHSIKTYTCRYCPKTYDRFYLFKAHENSHTKKNRFQCDICKKFYACKSSLRIHVLGHYDRRKKHVCDYCGHVFHNFTYFRMHVASVHQKLRMFKCKLCPKTFTANKSLKEHIRDHTGERPYSCDRCTSTFKTSVLLRTHKRLCGLETQLSHDTGPKRYTCKICLLEIGTLGQLRSHMIRNHTGDKEHKCHICVKEFISKYALKRHIDEHNGIKYSCDICNINFAKYEQMRRHKSCFHAPNRKTEKDRQKIQCHMCGLYFKEIEKHMAVHKRKPFACQLCNKTFLNPVALNKHIKHSHDRIKFHACNMCDKKYCHKTGLDRHIVKVHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -