Ssim027695.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spicauda simplicius
Gene Symbol
-
Assembly
GCA_949699795.1
Location
OX453087.1:3559757-3566428[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.014 1.3 10.4 0.2 2 23 19 41 18 41 0.93
2 25 1.3 1.2e+02 4.2 1.3 1 23 64 86 64 86 0.97
3 25 0.0026 0.24 12.7 1.5 1 23 90 112 90 112 0.98
4 25 0.22 20 6.6 0.8 2 23 148 170 147 170 0.90
5 25 0.46 42 5.6 1.8 6 23 182 207 177 207 0.75
6 25 3.8e-07 3.5e-05 24.8 1.6 1 23 213 235 213 235 0.98
7 25 1.8e-05 0.0016 19.5 0.3 1 23 340 363 340 363 0.97
8 25 0.65 60 5.2 0.6 2 23 389 411 388 411 0.90
9 25 0.19 17 6.9 4.3 3 23 436 456 434 456 0.96
10 25 0.019 1.8 10.0 0.4 1 23 460 482 460 482 0.96
11 25 0.0017 0.16 13.3 0.3 1 23 488 511 488 511 0.96
12 25 0.0021 0.19 13.0 1.3 2 23 519 541 518 541 0.95
13 25 1.7e-06 0.00015 22.8 1.3 2 23 547 569 546 569 0.97
14 25 0.39 35 5.9 0.9 1 23 575 598 575 598 0.92
15 25 3.7e-05 0.0034 18.5 1.7 1 23 604 627 604 627 0.98
16 25 0.078 7.1 8.1 0.1 1 23 729 752 729 752 0.94
17 25 1 95 4.5 0.0 2 23 779 801 778 801 0.85
18 25 0.55 50 5.4 1.2 2 23 824 845 823 845 0.96
19 25 8.3e-05 0.0075 17.4 0.5 1 23 849 872 849 872 0.96
20 25 0.00028 0.026 15.8 2.6 1 23 877 900 877 900 0.94
21 25 0.72 65 5.0 0.5 2 23 908 930 907 930 0.94
22 25 9.5e-05 0.0087 17.2 1.6 2 23 938 960 937 960 0.94
23 25 0.00076 0.069 14.4 1.0 1 23 966 988 966 988 0.99
24 25 1.2e-06 0.00011 23.2 0.8 1 23 994 1016 994 1016 0.99
25 25 7e-07 6.3e-05 23.9 1.4 1 23 1025 1048 1025 1048 0.98

Sequence Information

Coding Sequence
ATGATTGATTCTAAACTTAGTTATCATCCCATCAAAGTCGACATTACTGATCTACGTTGTACCGTTTGTAGTAAAAGCTTGGAAGATCTCAACGACCTTAAAGACCATTTGGTCAGCGAACACAATAAAGTCATCCACAAGAATATCAAAGATATCATACTGCCTTTTCGACTGGAAAACGGTAAAAACTTCACATGTGTCATATGTTCCGTCGTGCACGTATCGTTTAAGAATCTCTATCTTCATATGAGCAGCCATTATCGTAATTATTGTTGTGACCAATGCGACGCTGGCTATATTACGATCACGGCTCTAAGGAAGCACAGGAAGACCCATTTCCAAGGCAACTTCTTGTGCGAGTACTGGGTTAAGACATATACCTCGCTAACGAAAAAGCGTAATCACGTGAAAGGTGTTCATACTGGCAGTTGGTTGAGGAATAAATGCCCTCACTGCCCCGAgatatttatgaattactacGATAGGAGTGAACACTTTGAGAAAGCGCACAACGAAGTGCCCTTGGTGTATCCCTGCAACGCGTGCAAGCGGAGTTCGTGTGAAGTGTCTGAGAAGTCGTTCTCGATAGCGAGGACGTTGAAGGAGCACATGAAAGTACACGACGACGTCAAGAGGTACCAATGCGAGGTGTGCAATAAAATCTTCATGCAGAAGAGCAGTTTGAAGAGACACTTGCGTTTGCATCAAGATGATTTGGACATTTTCAAGGAACTTGATGAGGTCAAACATATAATAGACAATAGGAAAGTTACGTTGAAACAGATCGCAGCTGAGAAGAAAGCGAAGGAGATTGCCGAAAAGATTGTTGGATgcCGTACGAGAGCATCAAAAAAACGAAAGAGGACTTTAAAGGCGGCTAACGAGGACACTCAGCCGATATCTAAGTTAGTTATTCGCGAAAAGCATCTGTCCGAGATGCAGAAGCAATGGCACAACTTAACAACGTTGCTCAAATACTCAAACGCGACGCCATTCAAAGATAGGAACGATGCGGGATACATATGCGCGTACTGCTATAAGACATTTCCCGATCCTGACGCGTTGAGGAATCACACGAAACGGGATCACGGTAAAGAGAAACCATCATTCAAAGCGGGTTCTGGAATGAGTAGCTTTGTAGCGTTCTTGGATATTGTAGATCTAAAATGTACGATATGCGATCAGCACATGGATAGCTTAAGGACTTTAACGGAGCATCTAGTGAACGTACACGAAAAGAATTATTACCTGGAAGCAACGGATTACTTCCAGCCGTTCAAGCTGACGAACGAGCAGCAGATGAACTGCTGTCTCTGCAATGAAATATTCCACAATATGAAACTACTGATGCAGCACATGAACAATCATTTCAGGAATTTCATTTGCACGATATGCGGCGCCGGTTTCGTGAACAGCTTTCGTCGAAATCGACACGAGACTACCCACGTCAAGAAGTCGAGCTTCGCTTGCAAGTATTGTGGGCAGACTTTTGCTGCTGAGTCGAAAAAGAAAGCTCATGTTAACACTGAGCATAAAGGTATCGCTGGCGACAGCGTGTGCCAGATTTGCAAGGCTAGGTTTAAGAATTACTACCAAAAAACGAGACACATGATGCAAGTTCACAACGTTGAAGGAATAAAATGCGATAAGTGTGATAAGaagttcaatttgaagtcaaatCTGATGCTTCACATGCGAAGCGTGCATTTGAAGGAGAGGCCATACGAATGCTCGGTGTGCAACATGGGATTCTTCATCAAGAGACACATGATAGGGCACTATATGGCTACTCACACGAACGAAAGGAAGTTTAAGTGTGAAGTGTGCGGGAAAGGATACGCTACTCAGAATAGTAAACGGAAACATATGAAGAAGAATCATGGTAGCAGAGATGACAGTACTATCCTGACGGACATTCAGTCCACGTTGAAACCGAAAATCAAACATGAAATACATATTGGCACCAAAGATTTACTAGCACTACCGGTTGCCGCTGATTggaaaataacaataactaaGAAGGAAACTAAGGAATTAACTGATGTCCCAAATAATAAACCGAATTCGATAAAACTAGCTTTTAAGAAAAGAGAAAGGAAGGAATTGGACAAACATTTGCATAACATTAGAACTATTCTATTGCATTCAAATGCAACACCGATTAAAAACCATAATGGAATGGGATATGTGTGTGGATTTTGTCCATTGTACTATGAGAAACCGGCTGATCTCAAGGACCATACATTAGAGAGTCATAATgatacagaaataaatatattcatgaaAGATTCTTATCTGGGAGGATATATAGTTCGCCTTGATATAACTAACCTACGGTGTACGATTTGTGGCAAGGATATCGATGGCTTGGAACAGATAGTAGACCATTTACAAGTagatcataataaaaaaatgtttaccgaTATCAAAAACCGCATAGTGCCATTTGGTTTCAACAAGGAAGCATTATACTGTTGCATATGCGCGAATAAGTTCGACAGTTTCAACGTATTACGTATTCACATGAATATACATTACAGGAACTTTGAGTGCGAGGAATGTTCGACTCCATTTATCACCCAAAGAACGCTACGTAACCACCAATCGATAAGTCACAAGAAAGGTGAGTTCAAATGCTCTCACTGTGACAAAGTTTACGACACACGATCTAAAATGCTGAAGCACGAAAAGGCAATTCATATAGACGGGAAGCATAGAATCAAATGTCCATACTGCGAAGAGAAACTGATTAACTACAGGAGAAAGCGTGAACACATGGAGAAGGTACACGGCGTCGAGCCTAAAGACATACGTTGTATGGCGTGCGATAAAACCTTTACAAGTAAATCGAAATTGACGACTCATACGAATCGGATTCATTTAATGCAACGGAAATATAAATGTGATTCGTGCGAGATGAGATTCTTTAAGCGAGCTGATTTGGCGAGTCATATGCTTAAGCATACTGGCGAGAGGGCGTATAAATGTGATATATGCGCGAAAACGTACGTAAGGAAGCCAACATTGCGAGAACATATGAGAACACATGAGACTGGCAGTGCTAAGTGCAGGTTTAAGTGCGAAAATTGTGGAAAAGCGTTTGTGTATAAAAAGTCATGGAGAAAACATATGCGGTCCATACATTCAGAAATTGTTTGA
Protein Sequence
MIDSKLSYHPIKVDITDLRCTVCSKSLEDLNDLKDHLVSEHNKVIHKNIKDIILPFRLENGKNFTCVICSVVHVSFKNLYLHMSSHYRNYCCDQCDAGYITITALRKHRKTHFQGNFLCEYWVKTYTSLTKKRNHVKGVHTGSWLRNKCPHCPEIFMNYYDRSEHFEKAHNEVPLVYPCNACKRSSCEVSEKSFSIARTLKEHMKVHDDVKRYQCEVCNKIFMQKSSLKRHLRLHQDDLDIFKELDEVKHIIDNRKVTLKQIAAEKKAKEIAEKIVGCRTRASKKRKRTLKAANEDTQPISKLVIREKHLSEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCYKTFPDPDALRNHTKRDHGKEKPSFKAGSGMSSFVAFLDIVDLKCTICDQHMDSLRTLTEHLVNVHEKNYYLEATDYFQPFKLTNEQQMNCCLCNEIFHNMKLLMQHMNNHFRNFICTICGAGFVNSFRRNRHETTHVKKSSFACKYCGQTFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMIGHYMATHTNERKFKCEVCGKGYATQNSKRKHMKKNHGSRDDSTILTDIQSTLKPKIKHEIHIGTKDLLALPVAADWKITITKKETKELTDVPNNKPNSIKLAFKKRERKELDKHLHNIRTILLHSNATPIKNHNGMGYVCGFCPLYYEKPADLKDHTLESHNDTEINIFMKDSYLGGYIVRLDITNLRCTICGKDIDGLEQIVDHLQVDHNKKMFTDIKNRIVPFGFNKEALYCCICANKFDSFNVLRIHMNIHYRNFECEECSTPFITQRTLRNHQSISHKKGEFKCSHCDKVYDTRSKMLKHEKAIHIDGKHRIKCPYCEEKLINYRRKREHMEKVHGVEPKDIRCMACDKTFTSKSKLTTHTNRIHLMQRKYKCDSCEMRFFKRADLASHMLKHTGERAYKCDICAKTYVRKPTLREHMRTHETGSAKCRFKCENCGKAFVYKKSWRKHMRSIHSEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-