Ssim027702.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453087.1:3636322-3643127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.14 13 7.2 3.0 1 23 30 53 30 53 0.88 2 34 0.72 66 5.0 0.0 3 23 80 101 78 101 0.95 3 34 0.0057 0.52 11.6 2.1 1 23 122 144 122 144 0.98 4 34 1.6 1.4e+02 4.0 2.0 1 23 148 170 148 170 0.90 5 34 0.43 39 5.7 0.6 1 23 174 197 174 197 0.87 6 34 2.2 2e+02 3.5 3.4 3 23 205 226 203 226 0.91 7 34 0.02 1.8 9.9 0.1 3 23 235 256 233 256 0.94 8 34 0.00041 0.037 15.2 4.7 1 23 262 284 262 284 0.97 9 34 0.094 8.5 7.8 1.5 1 23 334 357 334 357 0.89 10 34 0.15 14 7.1 0.0 2 23 383 405 382 405 0.96 11 34 0.0021 0.19 13.0 1.1 2 23 427 448 426 448 0.97 12 34 0.052 4.8 8.6 1.0 1 23 452 474 452 474 0.94 13 34 0.0093 0.84 11.0 0.2 1 22 478 499 478 501 0.88 14 34 0.74 68 5.0 2.4 2 21 508 527 507 530 0.89 15 34 0.00082 0.075 14.3 0.1 3 23 539 560 537 560 0.94 16 34 0.047 4.3 8.7 5.3 1 23 566 588 566 588 0.96 17 34 7.5e-07 6.8e-05 23.9 1.3 1 23 594 616 594 616 0.99 18 34 0.0014 0.13 13.6 2.6 1 23 622 644 622 645 0.95 19 34 0.0097 0.88 10.9 1.3 1 23 700 722 700 722 0.96 20 34 0.029 2.6 9.4 0.1 2 23 751 773 750 773 0.93 21 34 0.021 1.9 9.8 0.3 2 23 794 816 793 816 0.94 22 34 0.00098 0.089 14.0 2.1 2 23 822 844 821 844 0.95 23 34 0.018 1.7 10.1 1.6 1 23 849 872 849 872 0.95 24 34 2.9 2.7e+02 3.1 0.1 2 23 875 897 874 897 0.93 25 34 0.036 3.3 9.1 1.6 2 21 904 923 903 924 0.92 26 34 0.016 1.5 10.2 0.5 1 23 983 1006 983 1006 0.89 27 34 0.15 14 7.2 0.1 3 23 1035 1056 1033 1056 0.94 28 34 0.21 19 6.7 1.0 3 23 1080 1102 1078 1102 0.95 29 34 0.0021 0.19 13.0 0.5 3 20 1109 1126 1107 1130 0.90 30 34 0.021 1.9 9.8 0.3 1 23 1135 1158 1135 1158 0.97 31 34 0.0014 0.13 13.5 0.1 2 23 1164 1186 1164 1186 0.94 32 34 6.6e-05 0.006 17.7 4.8 1 23 1190 1213 1190 1213 0.97 33 34 0.00028 0.026 15.7 0.6 2 23 1220 1241 1219 1241 0.96 34 34 0.0045 0.41 12.0 2.9 1 23 1247 1269 1247 1269 0.97
Sequence Information
- Coding Sequence
- ATGACACGTAACAAACAGATAAAGCGTAATGCATCCACGATCATAGAATGTTCCACGGTGACACCGTTCAAATGGCATCGGCATAACTATCTTTGCTTCTTCTGTCATAAAGAATTCAAGAATATAAAGGATTTGAAAGGTCATACTTATGAGGATCATGAAACTTCCAATGTTAAATCGGCCGTTGCTTTCCTTAAAGGTGGCGAGAAAGtgaaaatcgatgtatcggcTCTTGCgtgtaaaatttgtaatatcCAAATTAATGGCATTGACGAATTGCTCAGTCATCTCAAGACTGATCATGGTAAAGTATTCACACCGGTCGGTGAAGGTATAGTACCGTACAGATTGGAGGGAGATAGGTTTCAATGCGCCGTATGCCACAAGGAATTCCAGTATTTCATCAAACTAAACGAACATATGAACGAGCATTACGGGAATTTCGCTTGCGAACTGTGCGGTAAATACTTTCTCAGTCCGGATAGACTGCGCTGTCATATGTTCAATCACGGCTCCGGGTTTAAATGTAACGCATGTCCTGAGACTTTCGATTCGCTCACGCAGAAGCACGCCCACGAAGCGCAAGTCCACAATGAGGACAAAGGAATCAAATGCATCTTCTGTTCAGAGACATTCAAGAACTACATGCTTCGTAAACGGCATCACAACACCGTCCACAAGTTTCAATTGCCCGAAATAAACTGTCCCGTTTGTAACAAAGCTTTCGAGATTGTAAGCAAAATGCGCTCACATTTAAAAGAAGTGCACGTCAGAGAAAGGAATCACCCGTGTTCGACGTGCGGAAAGAAGTTCTTCTCTAACGCCCAGGTGCATCGGCACATGATGAAACATGTTGGTAAGAAACGCGAGATAGCGCTGACGGAGGCATTGAGTAAGTCCTCTATATCTAACACAATACGTAACAGAATGATAAAGTGCAATGCCACGACGATTATAGAATGTTCTACGGTGATACCATTCAAATGGCACAGGCATAAATATCTCTGCTTCTTCTGCCATAAAGTACTCAAGAACATCGACGATTTGAAAGTTCATACGTATGAAGATCACGAAAGCTCAAACGTTAAATCGGCCGTTTCTTTCCTTAAAAGGGATGAGAAAGTGAAAATTGATGTAACATCCATTGAGTGTAAAATTTGTCAAGCTAAGGCTACTGATGTTGATGAATTGATTGGTCACCTCAAGACTGATCATGGTAAAACGTTCACGCCGTACAGCGAAGGTGTAGTACCTTTCAAGCTGGAGAGAGATAAGTCTCAATGCGGCGTATGTGACAAGGAATTTCATTCTTTCGTCAAATTAAACGAACATATGAACGAGCATTACGGTACTTACATTTGCGACATGTGCGGTAAAGCTTTTCTCAGTCAGGATAGACTACGGTGTCATATGGCCAATCACGTCCCCGAATATAAATGCAGCGAGTGTCCTAAGATTTTTGATTCGCTTACGCAAAGGAACAGCCATGAAGCGGAAATCCACAATAAGACCAAAGGAATCAAGTGCATGTTTTGTACAGAAACCTTTAAGAACTACAGGCTTCGTAAGCGACATCACGGCGCCGTCCACAACGTTCAACTGCCCGCGATAAACTGTCCCGTTTGTGGCAAAGCGTTCGAGATCCCCAGTAAAATGCGTTCGCATTTAAAAGAGGTGCACGACAGAGAGAAGAATCACTCGTGCACGATGTGCGAACTGAAGTTCTTTTCTAGAACGCACGTGGAACGGCACATGGTGAagcatttcggtgaaagggcGTATCAGTGCGACGTATGCAAGAAGTCTTACGCGAGGAAACAGACGCTGAGAGAGCATATGAGGATACATAGCAACGATAAGAAACACGTTTGTGCCGTTTGCGCCCAAGCTTTTGTTCAGAACCACAGTTTGCGTATGCACCTGAGGGTGCATCATCCCGATTATGTTAATTCTCAGTTAGATAGTTCAAAAAATCTCTTTTCAGATGATAAACCGCGGAAATACAAGGGCTGCGAATCGTCCTCGATGCGTAGGCGAAAAAATCTAGAAATACTTTTCAACAACACGACGGTAATACCGTTCAAATGGCGCGGAAAGTATCTGTGTTTCTATTGTAGCAAGGATGTTACAGAGTACGAAGAATTACGGAAACATACGAGGTCTCACGGAAATTGTTCGACGAATGACCACTCTTTGAAAGTTCTCAAGGGTGGTCAGAACATGGAAATCAAAATAGACATTTCGGAAATATCCTGCAATATATGTAACGAACCGTTTCCGTCATTTGATGAAGTTTTGAATCATCTATACGTTAAACATAAATTAGAATACGACAAAGAAGTAGATATGGCAATAGAAGAATACAAGTTAGTCGATTTAAGCTGTTTAGTCTGCGATGAAAAGTTTACGTATTTTGGTTATCTAGTTTCGCATGTGAATAATTATCACCCAAAGAATTGTCTAATATGCGATAAATGCAATCAGAAGTTCAATAAGAAGAGAGACCTGTTCTCACATATAAAGAATTATCATAGAGAAGGAGGATACAGTTGCGAATTTTGTCCGCAAAGCTTTAGTTCTCTCAATATATTAAggaaacataaaaacaataggCATTTTACTAGATGCGGCGTTTGTCAGTTGAAGCTACCATCAGCTGTGCTTAAACAGAAACACATGGAGCTCGAACACCCAGATGATGGGTCTCTGCAATGCGATATTTGCTTTAAAGAATTTCACACGAAGCAAGGTCTCAAAATGCATTCGAAGAAATGCAAAGGGGACGACGATCTCTTTGTTGAAATCAAGAAGGAAAGTTTGGACGCGATGGATTTAGATGGAAACTATGAGGATGTGAAGCGACCTAGCGTAAAGCAGCTTAGAGAAAACATAGTGATTGTTATTAACATGTCTACAGCAATACCGTTTAATTTCTACAAGAAcaagtttaattgtttttactGTTCCAAGGACTTTCCAGATTCTGATTTGATGAGAGAACATACTGTGTTGGAGCATCCAGTATGCGATGTGAAAGAGAAATGCATCAGAAAGTGTAGAGAATCGGTAGCATGCgtaaaaatcgatatatcgtcTCTCGCTTGTAAGATTTGTTTCGAATCGATGAGCGATCTCGACAGTCTTTTAAACCATTTGATCATCAAACATAATGCCAACTATGATAAGTCGATAACAACGTGTCTGCAACCGTACAGGCTGATAAAAGATCACATGGCATGCCCGCACTGTCCGAACGAGATATTCCGCTTCTTTGGCACATTGTTAAAGCACATGAACAATAAACACACGGATAACAATATAATTTGCGTGTATTGCGGCCAAACTTTTAGACGGGATCAGAATTTGCGAGTCCATGTCTGGCGTCATCATAGAGACGGGAGGTTTAAGTGTAGCATATGTGGAGCGGAATGCAACATTCCGTCTAGACTGTACATGCATATGGCAAAAGCCCACGGGGTGAAAGCAGCCAAGTGCCCGAAGTGTCCAGAAGCGTTTGCGACGCAGTATTTAAGACAGAAGCACTTGATAGAAGCCCACGACTCAGGTCATAAGTGTTCATACTGTGGCAAGTTATTTACGAGAAACTCGTTCATGAAAGACCATATACGAAGGACGCATTTGAAAGAAAAGAACGTGGAATGTTcaatttgtaatatgaaattctttaataatattcttCTGAGGCGTCACATGGTAAAACACAGCGGGGAAAAGAACTTCCATTGTGAAGTTTGTGGGGAAAGGTTCTACTGGAGAAAGAGTCTCCGAACGCATATGTCTAGGCATAGTAAACTTATCAATCCCgtgcaaatttaa
- Protein Sequence
- MTRNKQIKRNASTIIECSTVTPFKWHRHNYLCFFCHKEFKNIKDLKGHTYEDHETSNVKSAVAFLKGGEKVKIDVSALACKICNIQINGIDELLSHLKTDHGKVFTPVGEGIVPYRLEGDRFQCAVCHKEFQYFIKLNEHMNEHYGNFACELCGKYFLSPDRLRCHMFNHGSGFKCNACPETFDSLTQKHAHEAQVHNEDKGIKCIFCSETFKNYMLRKRHHNTVHKFQLPEINCPVCNKAFEIVSKMRSHLKEVHVRERNHPCSTCGKKFFSNAQVHRHMMKHVGKKREIALTEALSKSSISNTIRNRMIKCNATTIIECSTVIPFKWHRHKYLCFFCHKVLKNIDDLKVHTYEDHESSNVKSAVSFLKRDEKVKIDVTSIECKICQAKATDVDELIGHLKTDHGKTFTPYSEGVVPFKLERDKSQCGVCDKEFHSFVKLNEHMNEHYGTYICDMCGKAFLSQDRLRCHMANHVPEYKCSECPKIFDSLTQRNSHEAEIHNKTKGIKCMFCTETFKNYRLRKRHHGAVHNVQLPAINCPVCGKAFEIPSKMRSHLKEVHDREKNHSCTMCELKFFSRTHVERHMVKHFGERAYQCDVCKKSYARKQTLREHMRIHSNDKKHVCAVCAQAFVQNHSLRMHLRVHHPDYVNSQLDSSKNLFSDDKPRKYKGCESSSMRRRKNLEILFNNTTVIPFKWRGKYLCFYCSKDVTEYEELRKHTRSHGNCSTNDHSLKVLKGGQNMEIKIDISEISCNICNEPFPSFDEVLNHLYVKHKLEYDKEVDMAIEEYKLVDLSCLVCDEKFTYFGYLVSHVNNYHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYSCEFCPQSFSSLNILRKHKNNRHFTRCGVCQLKLPSAVLKQKHMELEHPDDGSLQCDICFKEFHTKQGLKMHSKKCKGDDDLFVEIKKESLDAMDLDGNYEDVKRPSVKQLRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVLEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESMSDLDSLLNHLIIKHNANYDKSITTCLQPYRLIKDHMACPHCPNEIFRFFGTLLKHMNNKHTDNNIICVYCGQTFRRDQNLRVHVWRHHRDGRFKCSICGAECNIPSRLYMHMAKAHGVKAAKCPKCPEAFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMKDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCEVCGERFYWRKSLRTHMSRHSKLINPVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -