Ssim003123.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spicauda simplicius
Gene Symbol
JARID2
Assembly
GCA_949699795.1
Location
OX453056.1:14116669-14135634[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.3e-20 2.5e-16 60.6 0.1 7 88 460 538 456 539 0.92

Sequence Information

Coding Sequence
ATGAGTTTTAATGATTATTCTCGCCGGTCCAACATGAAGTCcAAGATACAAGCACAACGCAAGTTTGCACAAGGTGCCCCTGTACCGACTCCTAACATTAGCTCTGAAAGAAGATTGGAGGTAGCGCATAATAGGGAACAAAGAAATGTCGTGCGCAATAATACTCATCCCAAGGCTCTTCTGGATTTTGTGGCCTTCAACCAGATTCATGGACACAAGCAGCCTGTAGTGTTACTTGAAAGACTTCGAACGAATCAAGCCAACAcattaattaatcataataatgaACCAATGGAAGTCTCATCTGTGAATAACTCTTTAACAAATGGAAATTCAGATGACACTATGCGTCTTCGATCCTATAATTGGATTGAAAATACTGATTCAATGCTTGATGGATCAGAGAATTCAGACCATTATAAAGCGTTGGAAGTAGATTTCATAATGACTGAAATAAGTCCACCAAAATTTACcccaaaaattaaaacaaacagtTCAAATGTGTCTGATGTTTCTGTGGATGAAGACAGGCCATTAGTATACTTTGTTGACAAAAAGAAGCTGTCAAACAATAAAAGGACAAGGAAGCTTTCAGATCCTTCCCCTGTTCCAGAAGAAGCCCATGAAGATTCAGTTGATACTCTTATTTTAGATGTTGTTAATGATACACCGGACTATTGTGTGCCTTATAGTGAGGAACATAACGAGCACATCAATAACTCCAATTTGACTTTCGAAGAGCCCAGAATTTTGCTAGAAGAAGCTGAATGTGTTGTAAATCCAAGTAATTGTGCGCATGGAAATCCAAATAATTGTACGCAAGAGCCTGAAAACGTTGAAGAGGAAATGGATGAAGAAGAAGACGGATCTGTGGATCCATGGGAAGACTTCCATTCCATGGAcctcaatatattaaaaaaacccaCTAACCACATCATACGTTTTGAAACAGAAAATGAATCAATTAAGATATCCCCTGATGGGATAGTAATTAAGGAAAGAGGTAAAGCGAATCGAGCCAAAGGCACATCATCTACGAGCAACGGCAACAGAACAATGTCGTCCCCTGAAGTTGACAGTAACGAAACATGTATAAACATTTCTGATTCTGACTCAGATGAACCATCTAGGACGACAGAATTGCCGCGCAAATGTCTGGACGCTCCTGTTTTTACACCGAATGCTCAGGAGTTTGCGGATCCCGTGGCTTACTTTGATTCAATAATGCCGATAGCCAGCAAATATGGCATCTGCAAGGTAGTGCCTCCTGCAGGCTTTACCCCATCCTGTTGTGTAAATGATGAGATGACATTTAACGTCATAAATCAATACGTCCCCCGTTTATTTACGAGGTGGGGTCCAGGCTCAAAAGAATTGTGCACAATCAAATCTCATTTAGCGTCGCAAGGAGTTGTCTTCAAACGATCTCCTTTGTATGAGGGCATGGAGGTAAATCTACCCAAATTGTATAAAATCGTGCAGAATCACGGaggattaaaaaaagttatagagCGGAAACGATGGGGCCGAGTGGCTGAAGAAATGCGATTCACGAAAGGACCTAACCCAGAAAAAAAATTAGACCAACTCTATGTCAAATATCTTTTGCCTTATGCTGCATTATCAACTCGGGAAAGGGGTGACATTATAGCCAATGTCGAGCGTGTCTGGGGGAAAACACATCGTAAAATGATGGAACGCGCAAATATTCCTTTATACAGACAAAACAGGCTCCTAAGTGACTGTGAAACGTCTGAGGAAGAAGACTCGGAAGACGACGATTTGATCACAACTGCTCTCGCAGAAGTAGAAGAATGTGTAGTGACGGGCCGAAAAATGAACTTGGCCACTTTcaaaaagATTGCTGCAACAGCACAAGATACATTTTTCACCTCAAACCCTTCTACCTCTGAGGTTGAAAGGGAATACTGGCGTATCGTTTTACTGGGGGACGATCATCTGTGTGTGAATTGCGCTTCAATAGACACAGGCACTGAGGGCTATGGATTCACAACTAACTCTGAAGAACCCTTCGCTAAACACCCGTGGAATTTAAAAAGATTTACTAAGAACCCCAGAAATGTTCTACAATCTCTGGGATCATTAGTGGGTGTCACCGTACCGACATTGCATCTCGGTATGGTATTCTCGACCAGCTGCTGGCACAGGGATCCGCATGGCCTACCATGGGTGGAATATATGCATGTTGGGCCACCGAAAATTTGGTATGGTATTCCCCCTGAGCAAAGTTCGAATTTTAGAAAGGTGGTGGAGATGCTATGCCCGACTTCATATCAGAATAAATCTATTTGGCTCCCATCAGATATTGTCATGGTCCCGCCAAGTATGCTCCGCGAACACAATGTGTCGCTCGCGCGCGTTGAACAGTTACCTGGCGAATACATTATAGTTTTCCCCAAAGCATATTCTTGTTCCATTTCAACTGGCTTCACAATCTCCGAAAGTGTGTACTTCGCCTCTACACACTGGCTTCACAGTGGACTGCAATTTTTCTTGGAGGCCCAGTTTAATTGCGAGCCCACCATGATATCAATCGAGGCATTGCTGCAAAAAATGGTTATGACTCCGCATATTCCATTAACAGTTTTGCAGCCGGCACTTTCTGTACTAAACACTGTGTTCCATAATGAGAAGACTAATCGCCACACGCTGGAAGATGTCACGGATGCCAGCCGAATTacgTACCTAAAACATGAGGTGGACGTATGGAATGTACGTGATCAGGACGAGTGCATGGCTTGTGGAAAGCCGTTATATCTGTCTCGGGTCTCTGGGCTGACTAAAAACAACACAATGCTTTGCCTTGCTCACGCCTTGGTTATTGTAGAAAACAAGACTGCGAAGAATCGTCCAGTGCCACCTTTTCGTATGGATTACTTTTACAGCCAAGAAGAAATGGACGCAATTCTGGAACACGGTAAGAGTCGCCTACTGAGCCTATAA
Protein Sequence
MSFNDYSRRSNMKSKIQAQRKFAQGAPVPTPNISSERRLEVAHNREQRNVVRNNTHPKALLDFVAFNQIHGHKQPVVLLERLRTNQANTLINHNNEPMEVSSVNNSLTNGNSDDTMRLRSYNWIENTDSMLDGSENSDHYKALEVDFIMTEISPPKFTPKIKTNSSNVSDVSVDEDRPLVYFVDKKKLSNNKRTRKLSDPSPVPEEAHEDSVDTLILDVVNDTPDYCVPYSEEHNEHINNSNLTFEEPRILLEEAECVVNPSNCAHGNPNNCTQEPENVEEEMDEEEDGSVDPWEDFHSMDLNILKKPTNHIIRFETENESIKISPDGIVIKERGKANRAKGTSSTSNGNRTMSSPEVDSNETCINISDSDSDEPSRTTELPRKCLDAPVFTPNAQEFADPVAYFDSIMPIASKYGICKVVPPAGFTPSCCVNDEMTFNVINQYVPRLFTRWGPGSKELCTIKSHLASQGVVFKRSPLYEGMEVNLPKLYKIVQNHGGLKKVIERKRWGRVAEEMRFTKGPNPEKKLDQLYVKYLLPYAALSTRERGDIIANVERVWGKTHRKMMERANIPLYRQNRLLSDCETSEEEDSEDDDLITTALAEVEECVVTGRKMNLATFKKIAATAQDTFFTSNPSTSEVEREYWRIVLLGDDHLCVNCASIDTGTEGYGFTTNSEEPFAKHPWNLKRFTKNPRNVLQSLGSLVGVTVPTLHLGMVFSTSCWHRDPHGLPWVEYMHVGPPKIWYGIPPEQSSNFRKVVEMLCPTSYQNKSIWLPSDIVMVPPSMLREHNVSLARVEQLPGEYIIVFPKAYSCSISTGFTISESVYFASTHWLHSGLQFFLEAQFNCEPTMISIEALLQKMVMTPHIPLTVLQPALSVLNTVFHNEKTNRHTLEDVTDASRITYLKHEVDVWNVRDQDECMACGKPLYLSRVSGLTKNNTMLCLAHALVIVENKTAKNRPVPPFRMDYFYSQEEMDAILEHGKSRLLSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-