Spin002274.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387637.1:1998950-2008075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3e-05 0.0019 19.2 3.4 1 23 238 261 238 261 0.98 2 9 0.49 40 5.5 4.4 1 23 268 290 268 290 0.97 3 9 0.029 2.4 9.4 6.5 2 23 322 343 321 343 0.94 4 9 0.00042 0.034 15.2 1.0 1 23 347 370 347 370 0.97 5 9 0.23 19 6.6 0.5 3 20 388 405 386 407 0.93 6 9 0.36 29 6.0 4.7 2 23 471 493 470 493 0.90 7 9 3.3 2.7e+02 2.9 0.0 1 23 505 526 505 528 0.78 8 9 3.2e-05 0.0026 18.7 1.9 1 23 532 554 532 554 0.98 9 9 2.2e-06 0.00018 22.4 2.6 1 23 560 583 560 583 0.98
Sequence Information
- Coding Sequence
- ATGTCCAACATTAAAATTTGTAGGATATGTCTACGGACGGAAGCGAAAATGTATAAATACGATAGATTTCATCTTAAGCTTTATTACGAAGAAATGATGGCTTTAAAGGTACCCGAGAATGATGACCTGCCACAATACATGTGCTATGAATGCGCCACTATGTTGCACAAGTTCCACAAATTTAAAGAAAAATGTTATAATGGACAGATGGTTCTTAAAGAGATCCAATGGGCAGGCAACATCACATATGAAGCAATCTACAAAATTGACCGTCAAAACAGAAACCTAGAATCACCATTAAGCGTGGTTACATTGTCCGATAAAGTCAAAGGTTACAACATCAAAGAGGTTGATCTATCATCCGTCAAACACGAAATAAAAGAACGGCATACAGAAGATTTTGATCTCTATAGTGACTATTCTAATGACAAAGAATTGATGAGAAATGAAAATCAAGATACAAGAATCGGCAAGAGACTAGATGCACCATACAGTCCAGTAGCAATGGTTGTAGATGATAAGAAAGAGAGTATACTAAAATATGAAGAATATAAGAAACGGAAACGTAGCAGAGATGATGATGATGAGCCTAATAGAAAGATTAAGAAAGGTTTGGATCTGAGCAATTGGAAGGTGTATTCGTTGACGGAGGAGCAAGCGTTGGAGGAGTTTAGGGCGAGAGCTGAACATCCAAAGTATGTGGCTGCAAGGTATAAGTGTACGGAATGCTTTAAAGGTTTTTCGAAGAAAGAAATGTTGGAGAGGCACACCAAGAAAAGGCATTTTGAGGGTATAGGCGAGTACGAGTGTTGGTTCTGCCGCATGCGATACAAATGGAAGTGCATGCTGCGCAAGCACATGCTACAACACTACTACAAGTTCGAGTGCTTGAGATGTGACCTCGTCTGTATGCAGGAAAACACAGCAGTCCTTCATGAGGAGTTTCATAGCGGCGAGATGAAGCAGTGCATTCACTGCGATCAGAAATTCAGGCATCTGTCGACATACTATACACACCTGCGCACGCACAGGAGCGAGTATGTGTGCACATTGTGCGGCAGCTCGTTCGTGAGCAAGGCTGGACTGCATCAGCACAAGCAAGTCAAGCATGCTGATTATGAAATTGAGAGTCCCGATGATGACGATGAGGTGAACACGTTCTGCGGAAAGTGCGACATTAATTTCGAGACGCGGAAGGCTTACGAGGAACACGTGTTCCATTCGGCCATGCACGCTGAAGATATGGAGTCTAAGGATGACATCGCACATGCTAAGAAAATTTTCAACAAAAATGAGAAAGCTAAGATCATCACCTCATTGCGTACTATTCTGAAACCGGATTTAGTGTTTCCATCGATTATTCATAAACGGCGCAAGAGGAAAAATAAGCGGATACATCGTAAGCCCACCACGTGTTATCAATGTGGAAAACACTTCGACACTCAAGCGGCGTGCATGAAGCACCACCTGGAGGCTCACCCGCGTACTTCCTTCTACTCGCCCGCCGACCGACACATATGTGAGATATGTGGCGCCTCTCTAGCCCCCGGCAGCGTCGCAGTGCATCTAAACATCCACACTCGCGAGACGATCTACACATGCGACACATGTGGAAGACAGTTCCACACCAGCGTTGGGCTCAAACGACATTTAGTCACCCACACTGGCGAGAAAAAGTATGTGTGCCGGCAATGCGACAAACGCTTCACGCAGAGCAACAGCCTGAAGTTACACATCAAAACTTTCCATCTGAAACACCCGTATCCTAAAAGAAATAGACGTCAAAAGAAACCAGAGCCGCAGACTACAACTGAAGCAGGGGTGACCACCGAAGGTGAGTCGGACCACAGCCTCCCTGAACCCGATATGCCTGAACCTCAAATGGGAATCGAACCCGTACCCGACGCTGTTCCCGTAGTAGATAATGATGCGCAGTATCTGCGGCTCTGA
- Protein Sequence
- MSNIKICRICLRTEAKMYKYDRFHLKLYYEEMMALKVPENDDLPQYMCYECATMLHKFHKFKEKCYNGQMVLKEIQWAGNITYEAIYKIDRQNRNLESPLSVVTLSDKVKGYNIKEVDLSSVKHEIKERHTEDFDLYSDYSNDKELMRNENQDTRIGKRLDAPYSPVAMVVDDKKESILKYEEYKKRKRSRDDDDEPNRKIKKGLDLSNWKVYSLTEEQALEEFRARAEHPKYVAARYKCTECFKGFSKKEMLERHTKKRHFEGIGEYECWFCRMRYKWKCMLRKHMLQHYYKFECLRCDLVCMQENTAVLHEEFHSGEMKQCIHCDQKFRHLSTYYTHLRTHRSEYVCTLCGSSFVSKAGLHQHKQVKHADYEIESPDDDDEVNTFCGKCDINFETRKAYEEHVFHSAMHAEDMESKDDIAHAKKIFNKNEKAKIITSLRTILKPDLVFPSIIHKRRKRKNKRIHRKPTTCYQCGKHFDTQAACMKHHLEAHPRTSFYSPADRHICEICGASLAPGSVAVHLNIHTRETIYTCDTCGRQFHTSVGLKRHLVTHTGEKKYVCRQCDKRFTQSNSLKLHIKTFHLKHPYPKRNRRQKKPEPQTTTEAGVTTEGESDHSLPEPDMPEPQMGIEPVPDAVPVVDNDAQYLRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859960;
- 90% Identity
- iTF_00859960;
- 80% Identity
- -