Basic Information

Insect: Sphinx pinastri
Gene Symbol: BCL11A
Assembly: GCA_947568825.1
Location: OX387630.1:5231347-5250002[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.9 3.2e+02 2.7 1.3 1 23 199 222 199 222 0.93

2 6 4.2e-05 0.0034 18.3 3.3 1 23 489 511 489 511 0.97

3 6 4.9e-07 4e-05 24.4 0.9 1 23 517 539 517 539 0.99

4 6 9.4e-07 7.7e-05 23.5 3.2 2 23 757 778 756 778 0.97

5 6 1.2e-05 0.001 20.0 3.3 1 23 784 806 784 806 0.99

6 6 7.9e-05 0.0065 17.5 0.4 1 22 814 835 814 835 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.9	3.2e+02	2.7	1.3	1	23	199	222	199	222	0.93
2	6	4.2e-05	0.0034	18.3	3.3	1	23	489	511	489	511	0.97
3	6	4.9e-07	4e-05	24.4	0.9	1	23	517	539	517	539	0.99
4	6	9.4e-07	7.7e-05	23.5	3.2	2	23	757	778	756	778	0.97
5	6	1.2e-05	0.001	20.0	3.3	1	23	784	806	784	806	0.99
6	6	7.9e-05	0.0065	17.5	0.4	1	22	814	835	814	835	0.97

Sequence Information

Coding Sequence: ATGGCAAGTAGACAGGCGGATGCGGACAGCGCGGCAGAAGGGGGTGGGTCCCCAACCCCTGGCGTGCCGGCAGACACGCTGACCTGCGGGGCTTGCAGGAGAGCGTTCGCCCTAGCAGACATCGTCAGGTTCATCCAGCACAAAGTCTCCTCTTGTGACAAGGATATAACTTCATACCACTGTTATAGTGCTGGTCCAAACTCTGACCAAGAAGATGGCTCGCGGCCTGGTCAAGTGTCGACCGCTAACTCGAGTGGTCGGAGGCCGTCACTCCTCACTGCCAGGAGACCTCCCAGCAGTAGGGTCCACACTCCGCCACTCGCTAGCCCTTCGATAGCGCCGCCTGATCTTCTAGAAGATGGCGGTGCGTCGAGCACGCCCAAGAGGCTATTAGATGGTGCCGAGGCAGAAACGTCAACACCCAAGAGAAGAGCATCGACGTCTCCAATGCCGTCAAGCTCACCTGATGTAGACATCAAGCCTAAAATCAAGCAAGAGCATATGGATACGTCAGCATCACCTGAAGATCAAAAGAAATCTAGGACGGAAGTCGCTGACGCCGAGTCTAATACAATGCATAGTGAACCTAGCAACTACGTGTGCTCTACGTGCAAAGCGCGCGTGCACTCGGCCTGGAGGCTCCTGCAACACGTCCAACACGTGCATGGAGTGAAAATCTACGTCGAGACATTACCGCAGCAGATGCCGAGCAAGCAAAACCATTCCTCGTCGAGTACTTCTTCGTCCAGCTCCGGTTGCTCCTCCACCGGAGCACCTCTCCCACCTCCCACATTACGCCACCATCCATTACTACCTCCTCCAGATATGCATTCCCCTTTTGGAGTTGGTGGGCTGCTTAGAATGCCACTGCCGGGCAGCCTACCACCTCTAGCGCATCCGTCAGTCCCTCCCGCGCCACTGTTCGCGAGACCAAACCATCACGACCACAGATTCAGGATGGAGCAGCTCGTTTCCGAACAGTTCCGTCACCATGGACTAAACCTAGCTGCAGCGGCAGCGGCGGTGGCAGCTAACTCACTGCCACCGCACCAGGCGTTTCCTTCGCCGGCTGATAGACCGCCGGTGATACCAACGTCTGTATCAGGCCGGGATCGGCCTCCACCAGTATCCCAGCCTCTCTCATTAGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCAATTCGAGCTCTCCTAGCCCCAGGAAGCATTCTCCTCCGTTCGCTTCCCCGTCGCCCTCCCGAGTCGGCCAGACTCCACCGGCGGGCGCCGGACCCGGAACGGTGGACACGCCTCGTGAAGCGACGAGGCCGCACAGCTCAACGTCACCTGAGCGGCGCACGGAGCCCATGGCAGCAGACGCGCCACCGCCCGAGCGCCCATCGTCGACGCCACCCGTCAAGCGCAATACCGATGAAGCCGTTCACTCGTGTGAATTTTGTGGCAAGAAGTTTAGATTTGAAAATAATTTGATCGTTCACCGTCGGTCACACACCGGTGAAAAACCTTTCAAATGTACCGAATGTGACGAAGCTTTCGAAAAAGCGTCAAAATTAAAGAAACACATGAAAGTCCATCGAGGATCTGATGGCAATGCCGAGGAAGGTGAATCCGGTGGCGACACTGCTGAGGATGATTCCGACGATGAGCTTGAAGACGAGGAGTTGGATGGTGAAGATGAAGACGATAACGAGGATGGGGAGGATGTTGAAGAAGCTGAAGACTTGACCGTATCTAACAGCAGCGCTCCGTCCGTACCGACCAGGAAACAGACACCGGCTCTACCGTCTCATCCCCCCTCTGCCTCTGTTGTTGGCGAATTGATGGACAAATTTGGTCTGTCCAATATTGCTCAGTACAGTGAAGCTTTCAAACAAGCGCTTCAAGAATCGGGCAATTCCTTAAAATGGCAGCTAGCTAAAGACCGAGACAATAATAATGGTCCGCCAAGCGACAAACCTAATGGCATGCCTCCTACAGCTGCGCTACGCCTAAAGGAGGAGTTTGCAAAGATGCCACCACAACCGCATCCGCTTTTCAACCCTTTTGAGAATCCTTTTGAAGCGTCAAAACGTATGAAGCTGGACATGGAAAGAGGCGACGGTTGGTGGTTACCCACACTACATGCCCAGAGACCGCCAGAAAATATATTCGACGGCCTCAAAACTAGCGGAAACGGACTATTGCAAAACCCTTTACTCAAATCCAAGGAAGGCCGGCGGAACGACACGTGCGAGTTCTGTGGGAAAGTATTCAAAAACTGTTCCAACTTGACCGTCCATCGACGTTCACACACCGGCGAGAAACCGTACAAATGTGAGTTATGCTCGTACGCATGCGCGCAAAGCTCAAAACTCACGAGGCACATGAAGACTCACGGCCGCTTGGGTAAGGACGTGTACCGGTGCCGCTTCTGCGAGATGCCCTTCTCCGTTCCATCGACCCTCGAAAAACATATGCGTAAATGTGTTGTGAATCAAAGTAACGGTGCTTCTCTGGCGCTATCTGATGACTCGAATGCGTGCCGTGACGAGGCGTCGTGA
Protein Sequence: MASRQADADSAAEGGGSPTPGVPADTLTCGACRRAFALADIVRFIQHKVSSCDKDITSYHCYSAGPNSDQEDGSRPGQVSTANSSGRRPSLLTARRPPSSRVHTPPLASPSIAPPDLLEDGGASSTPKRLLDGAEAETSTPKRRASTSPMPSSSPDVDIKPKIKQEHMDTSASPEDQKKSRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLLQHVQHVHGVKIYVETLPQQMPSKQNHSSSSTSSSSSGCSSTGAPLPPPTLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPAPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAANSLPPHQAFPSPADRPPVIPTSVSGRDRPPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSRVGQTPPAGAGPGTVDTPREATRPHSSTSPERRTEPMAADAPPPERPSSTPPVKRNTDEAVHSCEFCGKKFRFENNLIVHRRSHTGEKPFKCTECDEAFEKASKLKKHMKVHRGSDGNAEEGESGGDTAEDDSDDELEDEELDGEDEDDNEDGEDVEEAEDLTVSNSSAPSVPTRKQTPALPSHPPSASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPPSDKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRMKLDMERGDGWWLPTLHAQRPPENIFDGLKTSGNGLLQNPLLKSKEGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGASLALSDDSNACRDEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01209675;
90% Identity: iTF_01539114;
80% Identity: -