Basic Information

Insect: Sphinx pinastri
Gene Symbol: RREB1
Assembly: GCA_947568825.1
Location: OX387637.1:6584057-6588429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2 97 4.3 1.2 2 19 78 95 77 100 0.86

2 12 0.23 19 6.6 0.2 1 22 135 156 135 156 0.94

3 12 0.021 1.7 9.9 0.1 1 23 281 303 281 303 0.97

4 12 0.0011 0.091 13.9 0.4 1 23 312 334 312 334 0.99

5 12 0.00068 0.056 14.5 2.0 1 23 340 363 340 363 0.97

6 12 0.0028 0.23 12.6 1.7 1 23 706 729 706 729 0.96

7 12 0.00023 0.019 16.0 1.3 2 23 924 945 923 945 0.97

8 12 0.024 1.9 9.7 5.3 1 23 951 974 951 974 0.97

9 12 0.04 3.3 9.0 2.0 1 23 1007 1031 1007 1031 0.93

10 12 0.12 9.5 7.5 0.0 1 21 1054 1074 1054 1077 0.89

11 12 0.0017 0.14 13.3 0.2 2 23 1117 1138 1116 1138 0.96

12 12 0.016 1.3 10.3 5.0 1 23 1144 1166 1144 1166 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2	97	4.3	1.2	2	19	78	95	77	100	0.86
2	12	0.23	19	6.6	0.2	1	22	135	156	135	156	0.94
3	12	0.021	1.7	9.9	0.1	1	23	281	303	281	303	0.97
4	12	0.0011	0.091	13.9	0.4	1	23	312	334	312	334	0.99
5	12	0.00068	0.056	14.5	2.0	1	23	340	363	340	363	0.97
6	12	0.0028	0.23	12.6	1.7	1	23	706	729	706	729	0.96
7	12	0.00023	0.019	16.0	1.3	2	23	924	945	923	945	0.97
8	12	0.024	1.9	9.7	5.3	1	23	951	974	951	974	0.97
9	12	0.04	3.3	9.0	2.0	1	23	1007	1031	1007	1031	0.93
10	12	0.12	9.5	7.5	0.0	1	21	1054	1074	1054	1077	0.89
11	12	0.0017	0.14	13.3	0.2	2	23	1117	1138	1116	1138	0.96
12	12	0.016	1.3	10.3	5.0	1	23	1144	1166	1144	1166	0.97

Sequence Information

Coding Sequence: ATGTACTCTTTTGTTACAGAAATCAAAACAGAGGACTTCAGCGAGGCGAAAATAGAAGCCGAGGAAATGGAACAACTCAAAATTGAACAGCAAGAAATGCGCGTTCGAACAACCAGTATAGACAGCGACAATCGGTCGGACAGGAGTGACGAAGAAGACAGGCGGGCTCGCAAGAGGGCTGCTTCCTCCTCCCCCTCTCCGTTCCCGATGGACAAGAGGATCGCGCGCGTCGAGTGCCCCAAATGCAGGCAACGGTTCGAATCTGTCAATGCGTACAAAATCCACTGCTACACAGCCCACGGCGACGAAGTCAGGTCGGGCTACGACGATATCAACTACGATTTCTCAAACAAACACGTCCAGGAGATGATGAGGAAGCCGCAAATGATGCTAGAGCAACGCTTCCGATGCGGCTCCTGCTCCAGAGAATTCCCAACAACCACAGCATTGGACATCCATAAGAAGACTTGCACAAGTAGAGTCGCCAGCCCTGAACGCATCAGGCGGGACGATTTCTTAGAAAAATTGGAGCTCAGGAATAGAACTTACGCAATTTCCGGCACTCTAACCCCGCCGATGGATAGATTCGCGCCAAAGTTTGATGATAGACATCTTGCAAACGGCATACGTCATATTGACGCCGCGCGTGATTTGGCTGACATTCAATCAATTTTAAACGTAACTTCGGCTGGTGGCCTTTTAGAGAGACTGACAGGTACAAAAGTTGCTTTAGAAAACTCTGTTCTTACGCCTCCTGATACTATTATGAAAGAAAGAGAACCTGAAGAAACTCAAGACAATTTCGCGGCTGAATTCAGAAGGATGAAGCTACGCGGCGAGTTTCCTTGCAGATTGTGTCCGGCCAAGTTCCCGAACCTCAGAGCTCTGAAGGGACATAACAGAGTCCATCTCAGTGGGACCGGGCCTGGTCCGTATCAATGCAATATGTGCCCTCACGCTTCTCTGGATAAAGCTGCTCTGGTCAGGCACATGCGTACTCATAACGGTGACCGACCATACGAATGTGCCGTCTGCAATTACGCGTTTACTACCAAAGCAAACTGCGAGAGACATTTAAGGAACCGCCACGCAAAGGTGACGCGAGAAGACGTCAAGCGTTCTATCATTTACCACCCATCCGAAGACCCTAATAATGACGAGGTCAATTCCAAGCTAGCTCGAGATGATGTGAAGAGATCTTTAGCGTTCCACACACCTGAAATCGAAAGACGGAATGATGCCACTGGTCGTAATACACCCCTAACCCATTTCACACCTAGCTTCATTGCTGACAGGCATCCAGTGGCGTCTCTGTCAACTAAACCGATAATTGAAGCCCCAATAATCCCCAGAGAGCCAGATCAGCCTGGCCATAGGATCAAAGTAAAAGGCATTGAACAACTAACGCAAATACCAGAATATAGGCCGCCAGAGCCAATGTACATGCCTAGCGAAGTTCATTCAGATGCGTATGACGAGGAAGCTCCAGTTGATCTGAGTACGAGTGACAACAACAGCTGCGATGTATTAGACTTAAGTAAAAAGAAACGCGACACTGACGAAGAGCCTAAAGCTCCGCCAAGACCTTCTTTTGGACCAGACCCTGCGGCTGTCGCAGCATCGGCTTTCGAAAAGACAAGTTTCTTGTTAGCTCAGCAGAGACTTTTCGAAACCTCGTTTCCGAAAATAGATCCCGCTTACTATGCCACACATCTTTCTCAACTATATGCGGGCACCGTGCCTGGTCTGACGGGACTCCCGCTACCTCCGTCCTTTCCTTACTTTCTTCAACCCCCGTTTTTTCCTAACCCATCAGACTCTCAAGACATTGCCGAAATAAAACAACGCTTACAAAAAGAAATAATACGCAGTCTCAGTATGTCTGGTGGGAGGCTAGTTCCTAACGAACAAGAAGCTCAACCAAAGCAGGAGTCGGAAGAAGAGGAGGTAAAGCCCGTTCCACAGTCAATATCGCCCGCTTTGTCCCCACAAACTGAATCTCCGCGGCCATTAAGTAGCAATCTCGTACCGCAGACGGATTCTGTGAAAATGGTTATAAAAAACGGTGTACTCATGCCGAAACAAAAGCAACGACGGTATCGCACTGAGAGACCTTTCTCATGCTCTCAATGCACAGCGAGATTCACGCTCCGTTCGAATATGGAACGCCATGTTAAACAGCAGCATCCTCAGCACTGGAGTGTTAGGAGACCAGCGCCAAGGGCACCTCCACCATACCCTACATCTGATACGCTAGCTGATCGCGTTAAGTTCGCGCTCTTAGCTCGCCATCTCGAACGTCCCTTACAACAACCAGAGCGTTCACCCGTCCGTCGCGACTCCGACGAGGTCGCCGATAACGAAGAGGATGAGGATGATACCTTAGTTATTGATGAGGAACCAGAGCAAGACATTAAGCCTGAAGAACACACAGCGGCTCGTAGAGCGGCCGCTGAGATATTAATGGCGACTTGTCAACAAGAAATGAATAAAGACTTTGATCTTAAAATTGCCGGGAATTTGATCAACAAGCCCATTCCGATCCCGACTGACAAGATTGAAGCTGGAACTGATCCTATTACGGCTGGTCAGGAGCCTCTGCCAGTGCCAGTAGTTCCCGCACGGAGCGACGAGGAGGAAGATGAAGAGGGTCTAGTGGCATCGACCAGCGAAGGGACTAACTCTGGAAGTGATGAAAATAAGTCGGAATCGGACACCACACAGCCACCAAAGAAGAAGTCTGCGTACAGCCTGGCACCCAACCGCGTGTCCTGTCCGTACTGCCATCGAAAGTTCCCATGGTCTTCATCTCTGCGGCGCCACGTCTTAACGCACACTGGGCAGAAGCCTTTCAAATGCCCACACTGCCCGTTGCTTTTCACCACCAAGTCCAACTGCGACCGCCATTTATTGAGGAAGCATGGAGGCTCAGCCCGTGCTATACTAGCCGAGCCGATATCTGATGCCATAACGCCTCCCCAGCCTGCAAATGATACTCGTAGTGTGCCTGAGAGACCCTTTAAATGCACTTCATGCCCCACCAGCACTTTCTCCTCCCTGGAGACGTTGAAGAAGCATATGTCTTCGCGACATGGTACTGAGTCCCAACCGGGGTCTCCGAACCCTGAGATAGAGGATAACTCTGACTGCGGTCTGGTCTTCAAGTGCCATTTGTGTGAAGCGGCCTTTGGAGACAGGAGTGCTGCTCTGGCTCATTTGGGAGCAGCGCATGCCACAGAGTACGAGCAATTGGTGAACAAGGGTGCTTTGGACGCTGCCAGCGACCGCAGCGAGAGTGCCGACGACGATGAGCGGGGCAAGTTCCCTGACCACGCTAACAGAAAGGTCGTCTGCGCGTTCTGCGTGCGCCGTTTCTGGTCAGCCGAGGACCTGCGCCGTCACATGCGGACCCATTCAGGCGAGAGGCCGTTTGCCTGCGATCTGTGCACGCGCCGCTTCACGCTCAAACACAGCATGCTGCGCCACCGCAAGAAGCACAGGGAGGAAGTCACCGATGATGAGGAGGCTTCCCCTCCCAACACCCCTGTGGAACATGGCGTTACTAATGGCTACCGCTACCAAGACGACGACGGCTCCGGCAACGAGATCCCAAGCAACGTCAACAACAACAACTCGCCACCATCCGCGCCGTACGAGAAGAAACTCAAACTCGACATGACGTCGCGCAAATATTCCTCAGAAGCCGATAACGACGGCGAAAATGGCACCGACCTTATTGGAAAGCTACTCGGAATCCCAGACAAGACTATCAATAAGCTGCTGTCTTCAGCTGACAGCAGGCAGGCAGCCAAAATCCTCGGCGTCAACAAATGA
Protein Sequence: MYSFVTEIKTEDFSEAKIEAEEMEQLKIEQQEMRVRTTSIDSDNRSDRSDEEDRRARKRAASSSPSPFPMDKRIARVECPKCRQRFESVNAYKIHCYTAHGDEVRSGYDDINYDFSNKHVQEMMRKPQMMLEQRFRCGSCSREFPTTTALDIHKKTCTSRVASPERIRRDDFLEKLELRNRTYAISGTLTPPMDRFAPKFDDRHLANGIRHIDAARDLADIQSILNVTSAGGLLERLTGTKVALENSVLTPPDTIMKEREPEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPEIERRNDATGRNTPLTHFTPSFIADRHPVASLSTKPIIEAPIIPREPDQPGHRIKVKGIEQLTQIPEYRPPEPMYMPSEVHSDAYDEEAPVDLSTSDNNSCDVLDLSKKKRDTDEEPKAPPRPSFGPDPAAVAASAFEKTSFLLAQQRLFETSFPKIDPAYYATHLSQLYAGTVPGLTGLPLPPSFPYFLQPPFFPNPSDSQDIAEIKQRLQKEIIRSLSMSGGRLVPNEQEAQPKQESEEEEVKPVPQSISPALSPQTESPRPLSSNLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCTARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTSDTLADRVKFALLARHLERPLQQPERSPVRRDSDEVADNEEDEDDTLVIDEEPEQDIKPEEHTAARRAAAEILMATCQQEMNKDFDLKIAGNLINKPIPIPTDKIEAGTDPITAGQEPLPVPVVPARSDEEEDEEGLVASTSEGTNSGSDENKSESDTTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDAITPPQPANDTRSVPERPFKCTSCPTSTFSSLETLKKHMSSRHGTESQPGSPNPEIEDNSDCGLVFKCHLCEAAFGDRSAALAHLGAAHATEYEQLVNKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCTRRFTLKHSMLRHRKKHREEVTDDEEASPPNTPVEHGVTNGYRYQDDDGSGNEIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEADNDGENGTDLIGKLLGIPDKTINKLLSSADSRQAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490512;
90% Identity: iTF_00859860;
80% Identity: -