Spin004016.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387641.1:1393700-1414061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3 2.7e+02 3.0 0.1 1 23 85 108 85 108 0.88 2 10 0.00013 0.011 16.8 2.1 1 23 139 162 139 162 0.97 3 10 0.18 15 6.9 0.3 1 23 166 189 166 189 0.89 4 10 4.1 3.4e+02 2.6 0.3 2 19 206 223 205 226 0.86 5 10 0.36 29 6.0 4.7 3 23 239 259 238 260 0.94 6 10 0.0002 0.017 16.2 3.4 2 23 266 288 265 288 0.96 7 10 0.00022 0.018 16.1 1.2 2 23 306 327 305 327 0.97 8 10 5.2e-06 0.00042 21.2 2.2 1 23 333 355 333 355 0.99 9 10 1.4e-05 0.0011 19.9 0.4 1 23 361 383 361 383 0.94 10 10 1.9e-06 0.00015 22.6 1.9 1 23 389 412 389 412 0.98
Sequence Information
- Coding Sequence
- ATGAATACAATAGTGACAGAGGCACATCAACCACAAAATATTGAGGATTTGCGCGCTGATGTTGAATATAGAATAGCAAAAGACCAACAAAAGCAAAAAGAACGTTTTGACGCCATGCGTAAAAATCCAAAAGAGTACAGTGTAGGCGATTTAGTGAGAGTAGAGAAAGAGATTCACACTGACCCAGGGCAAAGTAGAAAGCTGTTACCTAAGTGTAGTGGTCCATTTAAAATTATCAAGGCGGCGGGCCCGCACTCGTGCTCGGTGTGCCTCACGCGGTGGGAGAGCGCGCGCGCGCTGCGGGCCCACACGCTCGCGGCACACGCGCGCCGGTACGTGTGTCGCGCCTGCGCACACGTCACGCGCTCCCGACACCGCGCCACCGAGCACGCGCACTGGCACAACGGTCACACGTTCCGTTGCAAAGTGTGCGGCTCAACGTTCTCCAAGTCGACGAGCTACCTCACGCACTTGAGGCTGCAACATCCGTCGCAACACCGCTGCGATCTGTGCGGCGAGGCGTTCCTCGGCGTCAACGGGCTGAACATACATAAGAAGAAGGCGCATCGGGCTACACAGACACGCGCGCCCCTCTACTCCCAGTCGGCCCCGCTGCCCTGCCCTTGTTGCGGCGCCCCGTTCCACACGCAGGCGGCGCTGCAGTTCCACCTGTCGCTGCCGCGCTCGCTGGGGTGCGGCGCGGCGCTGCGCCCGTGCGCCCACTGTGGACACAGCTTCCTCAGCGCGGAGCGGCTGCACGAACATCTCCGCGCCCATCACGGGGTCGGATCCCTCAAGTGCGAACACTGCGACAGATCGTTCTCGCACAAGCGCTCGGCGGCCGCGCACTACCAGCGCGTGCACCTCGGCGTGACGCGCGGCCGGGGCAGGGACGCGCGCGGGGACGTGCCCGTCGTCTGCGAGATATGCGGCAACAAGTGCATCTCGAAAGCGTCGTTGGTGCATCACCAGCGGATCCACTCCGGGGAGAAGCCGTTCCAGTGTCCCGAGTGTCCGAAGAAGTTCAGCGTGTGTCAGAGACTGCAGATCCACCTGCGCACGCACACGGGCGAGCGTCCGTTCAAGTGCGCCATCTGTCCCAAAGCGTTCGTGCACAAGGCGGCGCTCAACAGGCACGACCGGGTGCATACGGGAGTGAAGCCGTACTCGTGTTCCCATTGCGGGCGCGCGTTCTCTCAGTCTAACAGTATGAAGCTGCACGTGAGGACGGTGCATCTCAAACTACCGGCGCCGTACCGAAGCCGGAGGAAACTCAACGAGGGGGGGTGA
- Protein Sequence
- MNTIVTEAHQPQNIEDLRADVEYRIAKDQQKQKERFDAMRKNPKEYSVGDLVRVEKEIHTDPGQSRKLLPKCSGPFKIIKAAGPHSCSVCLTRWESARALRAHTLAAHARRYVCRACAHVTRSRHRATEHAHWHNGHTFRCKVCGSTFSKSTSYLTHLRLQHPSQHRCDLCGEAFLGVNGLNIHKKKAHRATQTRAPLYSQSAPLPCPCCGAPFHTQAALQFHLSLPRSLGCGAALRPCAHCGHSFLSAERLHEHLRAHHGVGSLKCEHCDRSFSHKRSAAAHYQRVHLGVTRGRGRDARGDVPVVCEICGNKCISKASLVHHQRIHSGEKPFQCPECPKKFSVCQRLQIHLRTHTGERPFKCAICPKAFVHKAALNRHDRVHTGVKPYSCSHCGRAFSQSNSMKLHVRTVHLKLPAPYRSRRKLNEGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859815;
- 90% Identity
- -
- 80% Identity
- -