Spin021753.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387640.1:8110522-8113322[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0049 0.4 11.8 3.7 1 23 318 340 318 340 0.99 2 12 0.92 75 4.7 0.2 5 14 387 396 385 400 0.86 3 12 0.00022 0.018 16.1 0.9 1 23 414 437 414 437 0.97 4 12 0.00034 0.028 15.5 1.3 1 23 441 463 441 463 0.98 5 12 0.0045 0.37 11.9 0.4 2 23 485 507 484 507 0.93 6 12 0.00085 0.07 14.2 1.8 1 23 511 534 511 534 0.98 7 12 0.014 1.2 10.4 0.3 2 23 557 579 556 579 0.93 8 12 7.6e-05 0.0062 17.5 2.7 2 23 590 611 589 612 0.95 9 12 0.0029 0.24 12.6 1.8 2 23 628 649 627 649 0.96 10 12 0.0052 0.43 11.8 0.3 1 23 655 677 655 677 0.96 11 12 2.3 1.9e+02 3.4 4.2 1 20 683 702 683 707 0.90 12 12 0.01 0.82 10.9 0.1 3 23 760 780 759 780 0.98
Sequence Information
- Coding Sequence
- ATGGGTAGGCGCAGCAAAGCTTCTCAACGTCTGAAATCATACTATAATCGAGAAACCGAACATCAGAGGCAGGAGCGGTTACGGAAAAACCGAGTCAGGAATATGATTAATCGAGCTATAGCGAATGCGCAGCGTCATATGAATTCTAATCAGAGCATGTCTACAGAAAACATCACGATGGAACTGAATGAGTATCTCGACGTATCTATAAAAGAGGAAGTCGACGATGGACAGTTATACATCAAAACAGAGATAGAAATGCACGAAGACGAACAAAACTTACCAACTGATAACCCATTTGAAAACGTGCAACTGCATGTCAAAGAAGAGATTAGTATCGAGAAAGATCCAGAAACAGATTTATTAACAGTGGAAACGCATGAGATTAAACTTGATGTGGAGAAATCATCATCTCCCATGAATAATATGCAAGATGTGGACATCAAACAAGAAGACAGTGAGATTATAACTGGCGACAGAGTGATTTCGTACGAGTATCCGAATTTTGAGGACAGTATGGACAGTAATGAGGCTGTGGCTTTGAGCAAAGTAGAGGCTTGCTTGCAAGACGATGGTTTGAAGAACGAAAGGCACGGGAATATCGATGATGGCAACTTCTACAAAGTAATCAAAAACGAGGCGGACCTGACTGTGACGGAGACACATTTGATATCAAACAAACTGATAAACACGACGTCGACGATCACCAACCCGCGGGACGGTCTCATAGAGTCGCAGACCACCAAGACATTAGTCATGGAGATACGGCCCATGACAGAAACAGCTATACCATTGAAACTCGGAAACCCTGAAGAAATATTACCGACCAATGCCAACATGGACTATGACGCATTCCAACTGAACTCGATAACCGGCGACGTTATATCGCTGGAACAGCAAGCTTATGAGCTACTAGAGAAGAAGTCGAACAAACACCCGAAGAATAAGAAGTACACGTGCTCAAAATGCTCGAGTGCTTACACTTGCAACTCGCAACTACAGAGACATTTGCGAGTTCACGACAGCATCGAGAAACGAGCGTTGGGGATCATTAAAGGTGTCAAAACTAGGACAGAGAATCGCAACAAGAAACTTAAGGTAGAAGATGACGAGGAAGAGAAAAATAATCAGCTTTTGAAGAAAGAAGGATATGAGTGCACTTGCGGGAAGGTCTTTCGTAGACGCAGCCGCATGGAGACCTGCTTAAGATCTCACAATTTGTTTGAGGACACCAACTCTTACCCGTGTGTGACTTGTTCGAGACAATTTAAGAGTAAAGAAGAATTGGTTCAGCACAGAAAAAGGGTACACAGAAAGAGATTTCCGTGCAAATTTTGTCCAACAGACTACAACACCAGAAAGGAGTTGTTCAAACACTTACAAATACATCAGAAGGTTCAGTTGATGGAGTACAAAGTTATTTCAGAGGTTGTGAAAAGTAAACAAAAGTTGAACTGTTTTATGTGCTCCAAATCGTATAACGAGTTGTCGGACCTTAAATCTCATGTTATGGAGGATCACAAGGAACCCTACAGCTGTCCGCATTGCAAACGGACCTTTCCAAAGATCATAGACTTAGGAAATCACACGAAAACATACCACCCAGATGTGGAGTGTCAGTCTGTTCTTGATGTGCTGGAGGCATTCTCTAAGCTGGTGAAGGCTTGGAAATGTGAAGAGTGCGGGATGCAGTTCCACGAAGCGGACAAACTCGCGCTACACCAGATAGAAAAACATAGTCCCGAGCTAAAAGCTGACCCTCAATTGCAATGCGAAGATTGTCGCAGAGTGTTCTTCACACAAAAAGGCCTCACTTCCCATCGGAGGATACATCACAGCACGGAAAACGTAGATGAAGCACAACCCGAAGAAACTGGTGTCATGTGCCTCGAATGTCGCAAGATGTGCAAAGATATGAACGCTCTGACTTCCCACATGCGACTACACTCACCAGATAGGAAGTATCCGTGCAAATTCTGCGATTTCCGCTTCGCAACGCCAGAGAAGAGGAAGGCACATGCCGAAATACACACGGGTATTATGAAATACGTGTGTTTCATTTGCGAATACCAGTGCAGCTCCGAGAACCGACTAAAACAACACAAATTTTCAACCAAACATAAGAATATGAAGGAGTTTCTGTTGTCCGGTGTGAAGGTACCTGAAGAGTCGTCGTCGAAAGAGTCGGAGCCCAAGAAAGAGGAAAAGGCAGTGAAAAAGAGGAAAAGAGAGAGAGACAGGAGTGAGAGTGACTCGTCGGAGGACTCGCAGGTGGCGTGTGACATATGTGGAGACACGTTCCCGTCAGAAAGCGAGATGCTGGAACATAAACAGACACACCCGTTTATAGAGTTCCCGAACGACGACAAGCCCAGTAGGATATTTTTTAAGTGA
- Protein Sequence
- MGRRSKASQRLKSYYNRETEHQRQERLRKNRVRNMINRAIANAQRHMNSNQSMSTENITMELNEYLDVSIKEEVDDGQLYIKTEIEMHEDEQNLPTDNPFENVQLHVKEEISIEKDPETDLLTVETHEIKLDVEKSSSPMNNMQDVDIKQEDSEIITGDRVISYEYPNFEDSMDSNEAVALSKVEACLQDDGLKNERHGNIDDGNFYKVIKNEADLTVTETHLISNKLINTTSTITNPRDGLIESQTTKTLVMEIRPMTETAIPLKLGNPEEILPTNANMDYDAFQLNSITGDVISLEQQAYELLEKKSNKHPKNKKYTCSKCSSAYTCNSQLQRHLRVHDSIEKRALGIIKGVKTRTENRNKKLKVEDDEEEKNNQLLKKEGYECTCGKVFRRRSRMETCLRSHNLFEDTNSYPCVTCSRQFKSKEELVQHRKRVHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKSKQKLNCFMCSKSYNELSDLKSHVMEDHKEPYSCPHCKRTFPKIIDLGNHTKTYHPDVECQSVLDVLEAFSKLVKAWKCEECGMQFHEADKLALHQIEKHSPELKADPQLQCEDCRRVFFTQKGLTSHRRIHHSTENVDEAQPEETGVMCLECRKMCKDMNALTSHMRLHSPDRKYPCKFCDFRFATPEKRKAHAEIHTGIMKYVCFICEYQCSSENRLKQHKFSTKHKNMKEFLLSGVKVPEESSSKESEPKKEEKAVKKRKRERDRSESDSSEDSQVACDICGDTFPSESEMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859791;
- 90% Identity
- iTF_00859791;
- 80% Identity
- -