Basic Information

Insect: Sphinx pinastri
Gene Symbol: -
Assembly: GCA_947568825.1
Location: OX387625.1:3313312-3321741[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.014 1.2 10.4 2.2 1 23 272 294 272 294 0.98

2 12 0.026 2.1 9.6 4.4 1 23 301 324 301 324 0.98

3 12 0.032 2.6 9.3 0.9 1 23 328 350 328 350 0.97

4 12 2.8e-05 0.0023 18.9 0.3 1 23 355 378 355 378 0.97

5 12 0.2 17 6.8 1.4 2 23 383 405 382 405 0.95

6 12 0.024 2 9.7 0.6 2 23 416 438 416 438 0.90

7 12 4.2e-06 0.00035 21.5 2.4 3 23 444 464 444 464 0.99

8 12 0.00018 0.015 16.4 2.6 3 23 481 502 479 502 0.95

9 12 1.1e-05 0.00092 20.2 1.0 1 23 519 541 519 541 0.98

10 12 0.021 1.7 9.8 0.0 1 20 547 566 547 570 0.88

11 12 2 1.6e+02 3.6 2.8 1 23 576 598 576 598 0.93

12 12 1.3e-05 0.0011 20.0 0.4 1 23 604 627 604 627 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.014	1.2	10.4	2.2	1	23	272	294	272	294	0.98
2	12	0.026	2.1	9.6	4.4	1	23	301	324	301	324	0.98
3	12	0.032	2.6	9.3	0.9	1	23	328	350	328	350	0.97
4	12	2.8e-05	0.0023	18.9	0.3	1	23	355	378	355	378	0.97
5	12	0.2	17	6.8	1.4	2	23	383	405	382	405	0.95
6	12	0.024	2	9.7	0.6	2	23	416	438	416	438	0.90
7	12	4.2e-06	0.00035	21.5	2.4	3	23	444	464	444	464	0.99
8	12	0.00018	0.015	16.4	2.6	3	23	481	502	479	502	0.95
9	12	1.1e-05	0.00092	20.2	1.0	1	23	519	541	519	541	0.98
10	12	0.021	1.7	9.8	0.0	1	20	547	566	547	570	0.88
11	12	2	1.6e+02	3.6	2.8	1	23	576	598	576	598	0.93
12	12	1.3e-05	0.0011	20.0	0.4	1	23	604	627	604	627	0.97

Sequence Information

Coding Sequence: ATGATAATGACAAATAGTCAAATAGATAATGAAAATGTAGAATCAAAGCCAATTGCAGGTTTTGAAAGTATAGATACAAATATGCCTAGTATACATGATAGTGAAACAATAATTCAAAAAATAGATGAAGACCATAACTCTCAATCAAACAAAGAAATTAATAAAAATGTTGACCCTGTGGTGAGAGAGAATATACAGACAGAAGAAAATGAAAATACTCTTAATAGTGACACTGCAGAAACTACACAGGAGTATGAATGTGATGATGAGTGTGAAATGGTAGAAGAATATCTTGAATCAGAAGAAGACAGCTTCTATTCAGACACTTCTGAGTCTCCAAGGGAAAATAAAAAAGATTTAGATTACACTATAATGCCCACAAATGAAAATACTGAAGACTCAAAAGTTTTAACCACAAAAGAAAATAACAACATTTCAAATGATACTGCATTTACAGATGAGGATAATAATTCTTCAGACACTATTGTATCTATGAAAGAAAATAATAAATCTTTAAATGATTTGCTGCTCAAAAACAAAAATAACAAATCACCCAAACCAAGGAAAGAACCACAAGCAAGAAAAAGAAAAATAACAAAAAATAAAAATCAAGAGGATGCAAGCGATTCTTCTGATAATGAACCTTTGATAAAGATATTTAAAGATTCTGAAATGGAAAGTTCAAAAAAGAAATACCATGATTTTAATGCTAAGTTTTTTGAGGGTTTTGGTACAGTGGTGTTGTTGACGCAAGAAGAGGCGAAAAAAGAACTGTTACTGAGGAAAGAATCTTATAATTACAATGTTTGCCCACATAAATGTGACTTGTGTTACAAAGGATTTGAATACGAAACTGCATATGATAATCATATAAAGAAGCATACTGATGCGTATGGTGGCTTTGAGTGTGATTTCTGTCACCTGAGATATCCTGCTAAGAGGTACCTCAGTAGGCACATTCTTACATGTCACAAAAGGAAGTTTATATGCAAGTTGTGTCCGTATGTTTGTTTCAATCTGGGCCAAGCTACGAACCATGTAAGACTTCATAAAGGAAAGAAATATCCTTGCAAAGACTGTGACCAGGTATTCAGCATGCCAAACAGTTTGCTGATGCACAAGCGAGTTAAACACCAGCTGGATTGTGTGTGTGAATTCTGCGGGGACACATTTGCTAGCACAAATGGACTCTACCTTCACAAAAAGAAGATTCATAAACTGGAAATCAATAAAAAACAAGGACCGTACTGCGAAGACTGTGACATACATTTCGCGACTACAATGGCGTGGAAAAAACATTTAGTGCTCAAACACTGTGTCAGTAATGGGTGCAAGCATTGCGGTGAAATGTTTTCTAATGAAGATGATTTGAAATCCCATTTGAAGACACATGCAAGAATACAATCGTTCAGAAACATGCCAACGACATTTCCCCTCGATTGCAGCCATTGTAAAAAAACGTTGTCGGACAGCAGTGAGTTCAAATCGCATATGACGTCGGAACACCCGAAGTCGTATGCAATCAAGATGTTAAATGTGGGAAATGAGAAGCGGTTTGTGTGTGAAACATGTGGAAAAGCGTTTAGGTTGAGCTGCCTGCTGTCGGCCCACCAGCGCGTGCACACGGGCGAGCGTCCGTACGCATGCGTCGAGTGCGGCGCTCGGTTCGCGCGTGCGCAGGCGCTGTCGCTGCACGGCGCGGCGCGTCACGGGCGCGTGCGGCGCCACGCGTGCCGCCTGTGTGGGCAGACCTTCCTCGCCAGGAGCGCACACAACAAGCACATGAAGATCCACCTCAATATTCGTCCTCATAAATGTTCAATATGCGAGAAAGGCTTCGTAAGCCCCAGTGACCTTAAAGGACATGTAAATCGTGTACACAACAAAGTGTCGCCCAAGAACAAAAACAAACGAAAAAGAAAAGACTGA
Protein Sequence: MIMTNSQIDNENVESKPIAGFESIDTNMPSIHDSETIIQKIDEDHNSQSNKEINKNVDPVVRENIQTEENENTLNSDTAETTQEYECDDECEMVEEYLESEEDSFYSDTSESPRENKKDLDYTIMPTNENTEDSKVLTTKENNNISNDTAFTDEDNNSSDTIVSMKENNKSLNDLLLKNKNNKSPKPRKEPQARKRKITKNKNQEDASDSSDNEPLIKIFKDSEMESSKKKYHDFNAKFFEGFGTVVLLTQEEAKKELLLRKESYNYNVCPHKCDLCYKGFEYETAYDNHIKKHTDAYGGFECDFCHLRYPAKRYLSRHILTCHKRKFICKLCPYVCFNLGQATNHVRLHKGKKYPCKDCDQVFSMPNSLLMHKRVKHQLDCVCEFCGDTFASTNGLYLHKKKIHKLEINKKQGPYCEDCDIHFATTMAWKKHLVLKHCVSNGCKHCGEMFSNEDDLKSHLKTHARIQSFRNMPTTFPLDCSHCKKTLSDSSEFKSHMTSEHPKSYAIKMLNVGNEKRFVCETCGKAFRLSCLLSAHQRVHTGERPYACVECGARFARAQALSLHGAARHGRVRRHACRLCGQTFLARSAHNKHMKIHLNIRPHKCSICEKGFVSPSDLKGHVNRVHNKVSPKNKNKRKRKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -