Spin023600.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387629.1:15464546-15471935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.017 1.4 10.1 3.0 1 23 287 309 287 309 0.96 2 12 0.00014 0.011 16.7 1.4 2 23 317 338 316 338 0.93 3 12 0.0072 0.59 11.3 0.4 1 23 342 364 342 364 0.97 4 12 0.00039 0.032 15.3 0.9 1 23 369 392 369 392 0.98 5 12 0.00093 0.076 14.1 0.2 1 23 396 419 396 419 0.94 6 12 0.016 1.3 10.2 0.1 2 21 436 455 436 460 0.92 7 12 3.4e-05 0.0028 18.6 1.6 3 23 470 491 470 491 0.98 8 12 0.25 20 6.5 0.9 2 23 511 533 511 533 0.97 9 12 3.5e-05 0.0029 18.6 1.3 1 23 544 566 544 566 0.97 10 12 3.9e-05 0.0032 18.5 4.7 1 23 572 594 572 594 0.99 11 12 1.6 1.3e+02 3.9 5.5 1 21 600 620 600 622 0.93 12 12 3e-05 0.0024 18.8 0.5 1 23 628 651 628 651 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCTCCCAAAGTGTGTAGAATATGTTTGGTAGCTAACGTGAAGATGTTTCACCTGCAAAGTCAGCCTTTAGAGACGTATTTCGAAAATGTTATTGGAGTAAATCTTTTAAGTACAATGGAACTGCCCCTGTATGCCTGCTATGAGTGTGCTGCCCTTATGAAGAAATTTTATTATTTCAAAGAGAGATGTCTGAGAGGGCAAAGTACACTTTATGAACTATTAAACTGCAATGGAAAGATAACAGAACAAGTGCTACAACTTATAGATAGAGAACATTTACAACTATCGTCTCATATTGTTATTAGGCATTTTACCGAGCCAACACTTCAAGTACAGGAGAATGAATACTCCGAGCCATACAACATAAAAGAAGAGAATGATGCAGACTGCAAGATAACTTTAGATATAGAAAGTGTCAAAGAAGAAGATTATGATAACTTCACACCACTTATATCTAGTGACGACGATGAACCTCTATCTCTGCATAAAAGTATTAAAGATGAGAAGAAAGGTAAAAAGAAAGGCAAAAAGGTCAAGAAAGATAAGAAAAAGAAAATGGATGATATAGATATTGATGAGCAGTTGGAAGATGTCAAACCCACAGAAAACACAGTAGATCCACAATTACTAGTAATGGAAGCGGTCCACAAGCCGAAACGTGGGCGACCACGGAAGACCGATCCACCCAGCGAGGCGAAAGAACGGAAACCCAGACGGACTAAGAACACTGGCGGAGTGCTTGACGACGATATAGACTTGGACGAATACGTTACCATTGTGAAATTATCGATGGAAGAACAATTAGAAGAGATCAACAAGCGGCAGCAGTCGTCCAACTACCTGAACGCTCCATTCCAGTGCAACCTGTGTTATAAAGGGTTCATAGACACGCACGCCTGGAAACATCATGTCGGAAAACATGATCCTAGCGCTGGCGACATAGAGTGTCCAATATGCAAGTTCCGGTTCAAAACGAAGCGCACGCTGCAGAAACACTCCGCCAACCACGAGAAGAAATACGCTTGCAAGTCCTGTCCGTACGTCTCGAAGACTGCAACACAAGCAAAACAACACCAGAGATGGCATAAAGGCGTTACGTACAAATGTCAATATTGTGACGAAGTATCCACAAAGTGGACGTCGTATCTGAGTCACGTGCGGATTAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGTGGGTACTCTTTCGTTAGTAAACTGGGTCTCACTATGCATAAGACCATGATGCATAAGGATGTTATTGAGAAAGCTGAAGGGGAAGTTGCCACAGCGGGTCCATACTGCGAGGAGTGCGACGTGAAGTTCATCTCGGTGGAGGCATGGAAGCGGCACATGGTCACCTCTGTCAAGCATACACAGGCCACGCATTTCAATAACGGCTGTCGCGTGTGCGGCGAGTCGTTCAAGAGTTCTGAGGAGTTGCGCGTGCATCACCGCAAGGAACACGCGCGCAAGCGGCCCAAGAACTACGGCAAGAAACCCACCAACATCACCTGGCCCGCCAAGTGCGAACACTGTTCGGAGGAGATCCCGAACGCGCGGGAGTACTGGACTCACTTCCGGCGGATGCATCCGGACAAGAACTACCCCATACAGAAGAACCATATCTGTGATATTTGCGGAAAGAGTTTTAGAGGCAACGCGTTCCTAGTATATCACAAGCGCACGCACTCAGAGGATCGTCAGTTCAAGTGCAGCACTTGCGGCAAGGCGTTCCACAACCCCACCAACCTGCACATGCACGAGAAGACGCACTCGGACGTGCGCCCCTACCCCTGCACCGTATGCTTCAAGGCGTTCAAGTGCAAAGGCGCGCTTGATAGGCACTTCCGGTGCCACACAGGTGTGAAGCCGTACTCGTGCGAGGTGTGCGGCAAGTCGTTCGGTCAGTCCAACTCGCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCGCGCCCTACGTCAGCCGCGCACGCCTCGAGCGGCGCGCACACACCGCACACACCGCACACGCCACACACGCCACACACGCCACCCGGCCCCGCGACCACCAGCTCGCCTTCTAG
- Protein Sequence
- MEAPKVCRICLVANVKMFHLQSQPLETYFENVIGVNLLSTMELPLYACYECAALMKKFYYFKERCLRGQSTLYELLNCNGKITEQVLQLIDREHLQLSSHIVIRHFTEPTLQVQENEYSEPYNIKEENDADCKITLDIESVKEEDYDNFTPLISSDDDEPLSLHKSIKDEKKGKKKGKKVKKDKKKKMDDIDIDEQLEDVKPTENTVDPQLLVMEAVHKPKRGRPRKTDPPSEAKERKPRRTKNTGGVLDDDIDLDEYVTIVKLSMEEQLEEINKRQQSSNYLNAPFQCNLCYKGFIDTHAWKHHVGKHDPSAGDIECPICKFRFKTKRTLQKHSANHEKKYACKSCPYVSKTATQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLTMHKTMMHKDVIEKAEGEVATAGPYCEECDVKFISVEAWKRHMVTSVKHTQATHFNNGCRVCGESFKSSEELRVHHRKEHARKRPKNYGKKPTNITWPAKCEHCSEEIPNAREYWTHFRRMHPDKNYPIQKNHICDICGKSFRGNAFLVYHKRTHSEDRQFKCSTCGKAFHNPTNLHMHEKTHSDVRPYPCTVCFKAFKCKGALDRHFRCHTGVKPYSCEVCGKSFGQSNSRKLHVRTVHLKQPAPYVSRARLERRAHTAHTAHATHATHATRPRDHQLAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787949;
- 90% Identity
- iTF_00859758;
- 80% Identity
- -