Spin004113.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387641.1:2714662-2738488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 2.3 9.5 1.0 1 23 232 254 232 254 0.98 2 11 0.043 3.5 8.9 0.0 1 22 261 282 261 284 0.90 3 11 0.00055 0.045 14.8 3.7 1 23 315 338 315 338 0.98 4 11 0.0023 0.19 12.9 3.3 1 23 342 365 342 365 0.95 5 11 0.73 60 5.0 0.1 3 22 383 402 382 406 0.92 6 11 0.059 4.8 8.4 0.7 2 23 414 434 413 434 0.96 7 11 0.0001 0.0085 17.1 0.1 3 23 453 474 451 474 0.96 8 11 3.3e-05 0.0027 18.7 1.6 2 23 484 505 483 505 0.97 9 11 0.00017 0.014 16.5 0.3 1 23 511 533 511 533 0.98 10 11 6.3e-08 5.2e-06 27.2 0.3 1 23 539 561 539 561 0.98 11 11 0.00011 0.0086 17.1 1.7 1 23 567 590 567 590 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAAAATCTGTCGAATATGTTTGGTATCCAATATTCGTATGCATCGGATATCTGGCTCAGAGGTGCAGGACGTATACGAAAAGCTAACTAATAAGAAGATTCTAGAGGATGACAGTCGATACTGTGCGTGTTACATGTGCTATCGTCAGCTGCAGAAGTGTAAACAGCTTGCTACTAAAGCACAGAGGGCTGAGGAACTACTTAGGCAAGTCGCCGTTAACTCTATAAATCAGGATCATGAATCCATCTCCATAATCAACAGGCAGGCACATGGACTTGTGAGTTTAACTGTCGCTACATTAGAATGTTTTTACACACATGAAGATGTCAAACAGGAAAATGAAGTGAAATGCGATGGCAACAGAGTGTTTAAAACCGAATCAAATGAGAGAAGTGCAACAGAGTCCAAACAAGCTTGCGGAATTGACAGTGATGGTACTTCGGAGCCATTCAAAGACTTTGCCGATGGGTACGCGACTGATTCTGAAGATGATCTGCCTCTGAAGAGCATCAGCGCGAGACAGAGCCTGGACAGACGAGTCAAGGTGAAGAAAATTGTGTTGGTGCGAAAAAATAAGCAGAAAGATACAACATTGGACGCGCGCGAAGTCCTCCTGACAAAAGAACAACAATTGGAGGAATTGTTTGAGAGATCCAAATCTCTGAACTACATAAGTTCACCGTTCAAATGTGGATTGTGTTATAAGGGCTTCTTGGACGCAAGGGCTTATGAGAATCACAAAAGGAAACACGATGTTAGCAGTGGCGCGTTCGAGTGCGAGGTGTGCCGCATGCGGTACGGGTCGGCGCGGCTGCTGCGCACGCACGCGGCCGCCGCGCACGCGCGCCTGTTCCGCTGCAACAAGTGCACGCACGCCGCGCACACCATTAATCAAGCGAGGGAACATGAGAAATGGCACAACGGACACACTTATGAATGTCAACTCTGTGGACAGAAATTCAGGAAGTCAACCTCGTACCTGACGCACAAGCGCAAGCGGCACCCGACTGAGCACGTGTGCCACATCTGCGGGGAGAGCTTCGTGGGGAGACACGGCTTGTTGATGCACAAGAGCAAGACGCACAAGTGGGACCAGGAGCCCCTAGTGAAAGAGGAGCCGACCCCAGAGCGGTTCTGCGCGCAGTGTGACGTGCAGTTCGACACGACGCTCGCGTGGCAGCGACACATACTCACCTCCGTCAACCACACGCTGGGCGGCGACGGGTCGGAGTGCAAGATCTGCCATCAGAGTCTGTCGGGCGAGTCTCTGGCGACTCACATGCGGGAGCACGAGAAGTCTCTCCGACAGACGTCGCTCGCGCCCAGGAAGCTGGTCAAACTGGCATGCGACCAGTGCGAGGCGTCGTTCGTGGGCAGGTCGAACCTGCGCGCACACGTGCGTCGCGTCCACCTCGGCCTCAAGTACAACAAGAACGTCGTCTGCGAGCTGTGCGGGAAGAAGTGCACGTCCAACGCCGGCCTCAAGTACCACCAGCGGCGCCACACGGGCGAGAGGCCGTTCCCGTGCGCCCTGTGCGACAAGCGCTTCCCGGACAGCAACCAGCGGCGCATACACGCGCGCACGCACACCGGCGAGCGGCCCTACCCATGCGACGTCTGCGGCAAGCGCTTCAGCCAGAAACCCGCGCTCAACCGACATTACAGGGTGCACACCGGAGTGAAACCGTATGAATGTCAGTTCTGTTCGAAGACGTTCAATCAGTCCAACTCTATGAAACTGCACGTGAACACTGTGCATCTGAAACTACCCGCGAACAGGAAGAAAGGGCAAAACGCAGGCGAGAAGAATCATCAAACTGTCAATTAG
- Protein Sequence
- MSELKICRICLVSNIRMHRISGSEVQDVYEKLTNKKILEDDSRYCACYMCYRQLQKCKQLATKAQRAEELLRQVAVNSINQDHESISIINRQAHGLVSLTVATLECFYTHEDVKQENEVKCDGNRVFKTESNERSATESKQACGIDSDGTSEPFKDFADGYATDSEDDLPLKSISARQSLDRRVKVKKIVLVRKNKQKDTTLDAREVLLTKEQQLEELFERSKSLNYISSPFKCGLCYKGFLDARAYENHKRKHDVSSGAFECEVCRMRYGSARLLRTHAAAAHARLFRCNKCTHAAHTINQAREHEKWHNGHTYECQLCGQKFRKSTSYLTHKRKRHPTEHVCHICGESFVGRHGLLMHKSKTHKWDQEPLVKEEPTPERFCAQCDVQFDTTLAWQRHILTSVNHTLGGDGSECKICHQSLSGESLATHMREHEKSLRQTSLAPRKLVKLACDQCEASFVGRSNLRAHVRRVHLGLKYNKNVVCELCGKKCTSNAGLKYHQRRHTGERPFPCALCDKRFPDSNQRRIHARTHTGERPYPCDVCGKRFSQKPALNRHYRVHTGVKPYECQFCSKTFNQSNSMKLHVNTVHLKLPANRKKGQNAGEKNHQTVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859744;
- 90% Identity
- iTF_00859744;
- 80% Identity
- -