Spin019225.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387616.1:4682129-4692867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.3 24 6.2 0.8 1 19 62 80 62 81 0.91 2 15 1.2e-05 0.00099 20.1 0.4 1 23 152 174 152 174 0.98 3 15 4e-06 0.00033 21.5 0.6 1 23 178 200 178 200 0.97 4 15 0.021 1.8 9.8 2.1 2 23 207 229 206 229 0.92 5 15 0.0015 0.12 13.5 4.5 1 23 235 258 235 258 0.97 6 15 0.0086 0.71 11.1 0.2 1 23 264 287 264 287 0.96 7 15 2.9 2.3e+02 3.1 1.6 1 23 457 480 457 480 0.92 8 15 1.7 1.4e+02 3.8 0.1 3 23 506 527 504 527 0.92 9 15 0.12 10 7.4 0.0 1 23 551 573 551 573 0.96 10 15 0.00053 0.044 14.9 0.2 1 23 577 599 577 599 0.98 11 15 5.7e-05 0.0047 17.9 0.1 1 23 604 627 604 627 0.96 12 15 0.012 0.98 10.6 0.6 2 23 634 656 634 656 0.93 13 15 0.14 12 7.2 5.7 1 23 663 686 663 686 0.95 14 15 8e-05 0.0066 17.5 4.9 2 23 693 714 692 714 0.96 15 15 0.00028 0.023 15.7 4.1 1 23 720 742 720 742 0.98
Sequence Information
- Coding Sequence
- ATGTTATTGATATTCAAACATACAACGTGTGACATGAATGTATACTTCGACAGTTTAAAAAATTGCTCCACGCTTCCGACATTATTGTGGCGATTCAAGAAAAAATACAAGGACCACAGACAAAACGCGGCTATTATCATACAGAATTCAAACGCATGCCCTTTTAGGTGGACCCCGGGGAAGTACATGTGCGCATATTGCGACCTCACTTTCGGCGACTGCCACGGGGTTCGGTTACACTGGCCAGACCACCCGAACAAAATTGACTTTGTTAAATATGCTCGGACTTATTACAAAACAAAGGTTGAAGTCACGAACCTAAAATGTGAACTTTGTATGCAGAATATGTCTAATTTGGAAACGCTGGGCGATCATTTGATTGCGTTTCATGATAAGCCTATCATAAAGGATTGGGGGTTAGGTCTCACACCATTCGTGATTAAGGATGATTCTTACATTTGTGGGTACTGCGATACTAGATTCGTAGTGTTCAGCGCTTTAAATACCCACATGAACACGCACAATCCAAACTTTATCTGCTCGACCTGCGGCAAAGTGTTTGCTACTTTACAAAATTTAAAATCGCACGTGTCGAAGCATGATGTTAACTGGGATTTAAAATGTAGCAAATGTGACGAAATGTTTGCGACGAAAGATTTGAAACACGCACACAACATGTCGAAACACGCTGTGTCGCACCCTTACAAATGTCCCTATTGTACCGAAACTTTTAAAAATTATAACCATAGGCGATTGCATTTGGAGAAAAATCACGATAAGAAGGTGGAATACCGTTGTTCACTATGCCCGGCAGTGTTTGCAATGAGCGATAGAAGAAGGAAACACATTCGTGACGTGCATATAAAACAGAAGACCTTCCTCTGTCAAGAAGACGAGTGTAGTGACACGCGCACTCAAACAGTTTCAAAACTCGGCGAAGACGTCAAGAAGAGAAACGATGATATAAAGGCTAGAAAACGGCATGCTGCCATTTTATTAGAATACTCGAGAATATGTCCATTCAGGTGGACGAAAAACTTGTATGTTTGCTTTTACTGTGAACAAAGAACATCATTATTAAGGTGTAAGAAGATCGTGCCGTTATTTCAAGTAGCGTACGACTGGACTCTATGTAGACCACTCGGAACTATAACGGATTTTGGAAATTTGCCATCGAAGAGGCCATTGACACCTGAAACGCCACGCAGCGCCTCTCCGCTGCCGGAGAGTCGACCACCGACGCCTCAAGACACACCTGTCCAGATCTATCGGCCTTTAATACTTAAAAAAGTAACAGATATACGACAAAATGCTTTAATAATTTTCGAATTCTCTACAGCATATCCATTTGTTTATGGAAATAATAAGTTTAAATGCTTTATTTGCTCCCAGCCGTACTTGGATATGACAGTGCTGAAACAACACATGCATGAAACTCATACATTCGCTTCATTAAAACGACTGGTTAACAATCGTAGAGAGAACATATTAAAAGTGGATGTTAATGATATGAACTGTAAACTGTGTCCTGCAAAGCCTAACGACTTAGTTGAACTGAAGCAACATCTGAAAATAGTCCACAAGAAACCTGTAGACCCGGAACTTCACGACAATTTAATACCATTTAAACTAAACTCAGCCAACGGCCCTTACGAATGCGTGGTCTGTCAGGAGTCCTTTATCAAAGTTAGAATTCTAGTGATTCATATGAGCGTTCATTTTAACAACTACAGCTGCGAAGTGTGCGGTTCAGGGTTCATGACCCTACGTCTTCTCAAGAAGCACTTGGAAGTACACGAAACGGGAAACTATCCTTGCGATATATGCGAAAAAGCGTTCAGTACTCCGTACAAGCGAACGTTGCACATTCGTGGAGTGCATTTAAAACAATTTCCTCGTCGATGTCCCTTTTGCCCCGAAAGATTTAACTCGAATTACAAAAGGACTATACATCTTCAAGATGTTCATAATCAGTCAACCAGAGTACATATATGCCAAACATGCGGCAGAGGGTTCAACTTGAAATACCATTTGATTTGCCACACACGCTCCGTCCACATGCAAGAGAGAAATCAACAGTGTGATGTGTGTCATCAGAGATTTTGCAACAAGGAAACTTTGAAGCGGCATATGGTGATCCACACGGGAGAAAAAAATCATAAGTGCCACGTGTGCGGCATGGCATTTTTGAGAAGGAAGAATTTAAAAGACCATTTAAGATTGCACGATTTAGGTTAG
- Protein Sequence
- MLLIFKHTTCDMNVYFDSLKNCSTLPTLLWRFKKKYKDHRQNAAIIIQNSNACPFRWTPGKYMCAYCDLTFGDCHGVRLHWPDHPNKIDFVKYARTYYKTKVEVTNLKCELCMQNMSNLETLGDHLIAFHDKPIIKDWGLGLTPFVIKDDSYICGYCDTRFVVFSALNTHMNTHNPNFICSTCGKVFATLQNLKSHVSKHDVNWDLKCSKCDEMFATKDLKHAHNMSKHAVSHPYKCPYCTETFKNYNHRRLHLEKNHDKKVEYRCSLCPAVFAMSDRRRKHIRDVHIKQKTFLCQEDECSDTRTQTVSKLGEDVKKRNDDIKARKRHAAILLEYSRICPFRWTKNLYVCFYCEQRTSLLRCKKIVPLFQVAYDWTLCRPLGTITDFGNLPSKRPLTPETPRSASPLPESRPPTPQDTPVQIYRPLILKKVTDIRQNALIIFEFSTAYPFVYGNNKFKCFICSQPYLDMTVLKQHMHETHTFASLKRLVNNRRENILKVDVNDMNCKLCPAKPNDLVELKQHLKIVHKKPVDPELHDNLIPFKLNSANGPYECVVCQESFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNYPCDICEKAFSTPYKRTLHIRGVHLKQFPRRCPFCPERFNSNYKRTIHLQDVHNQSTRVHICQTCGRGFNLKYHLICHTRSVHMQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNHKCHVCGMAFLRRKNLKDHLRLHDLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -