Spin023604.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387629.1:15488911-15496202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.046 3.7 8.8 1.0 1 23 258 280 258 280 0.97 2 12 0.0002 0.017 16.2 0.9 2 23 288 310 287 310 0.89 3 12 0.16 14 7.0 0.8 1 23 314 336 314 336 0.95 4 12 0.0017 0.14 13.3 0.3 1 23 341 364 341 364 0.98 5 12 7.8e-05 0.0064 17.5 0.2 1 23 368 391 368 391 0.96 6 12 0.0048 0.39 11.9 0.1 2 21 409 428 409 433 0.92 7 12 5.4e-05 0.0044 18.0 0.6 3 23 442 463 442 463 0.98 8 12 0.47 39 5.6 0.6 2 23 483 505 483 505 0.96 9 12 0.00018 0.015 16.4 2.7 1 23 516 538 516 538 0.97 10 12 4.8e-06 0.00039 21.3 1.5 1 23 544 567 544 567 0.92 11 12 1.4e-07 1.2e-05 26.1 0.5 1 23 573 595 573 595 0.98 12 12 0.00057 0.047 14.8 6.8 1 23 601 624 601 625 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCTCTGAAAGTGTGCAGAGTGTGTTTGGTGACTGATGTGAAAATGTATCATCTGCAGACCCAGCCGCTAGGGACGTATTTTGAGAATATAACCGACGTAAATCTTTTGTCGACAATGGCGTTGCCGTTATACGCATGTTACGAGTGCGCTACACTAATGAAGAAGTATTACGATTTCAAAGAGCGATGCCTGAGAGGACAGACCACGCTTTATCAAATATTAAATAATTGTGGAAGGATCACAGCACAAGAGTTGCAAAAAGTGGACAGGAAAAATTTACAACTGTCCTCTGACATTGCAATCCAACATCTCCCTGAGCCAATACACTGCATGCACCAGGATGAGTTCATCAAGCTTTGTGACATAAAGACAGAGCCAGAAGATGAAATGGAACACAAGATCTCAATAGAATTAGAAGAAGATATAGATAACTTCCCACCACCTATATGCAGTGCTGATGTCGAAACTGTGTTACATAAAAGCATTGAAGAAGAGGAGATAGAAAAGAGAAAGCAAATTCAAGATGCAGTAGTTGCGAAATTGCCACCAGAATTGAAAGTCCAGAAGTTGAACCATGCTAATATGAAAGAGGGTGCTCCAAACAGGATCATGGATGGGCAGCGAGCAATGCCTAGCAACACTCGTGAGAAGCCTGAAGATGAGATTGATTTGGACAAATGTGTTACCATCACTAAGTTATCGGCAGATGAACAAATAGAGGAGATCAAGAAACGGCAGCAGTCGTCCAACTACATGAACTCTCCATTCAAGTGCAACCTATGTTACAAAGGGTTCCTTGATGCTGAGGCCTGGAAGCACCATGTAGAGAAACACGATCCTAGTGCAGGCGAGTTAGAGTGTCCCATATGTAAGATCAGGTTTAAAACTAAACGCACATTGAAGAACCACTCGGCCAACAACCACGAGAAGCAATACCTTTGCAATACATGTTCCTACGTCTCCAAGAATGTCCTGCAAGCAAAGCGGCATCAGAGATGGCACGACGGCGTCACATACACATGTCCGTATTGCGAGGATGTCTTCATTAAATGGACGTCGTATCTGAGTCACGTGCGGATCAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGTGGGTACTCTTTCGTTAGCCAGATGGGGCTAAACAGCCACAAACGACTGATGCATAAGGATGCAACTGAAAATCCCGAAGGAGAGGTTAAACCGGAAGCGGGTGCGTACTGCGAGGAGTGCGACGTAAAGTTCGTCTCTGAGGAGGCGTGGAAGCGGCACATGGTCACCTCCGCGAAACACACCAAGATCAATGACTTCAGCGGTTGCCGGCTGTGCGGCGAGACGTTCGAGAGTGCGTCGCAGCTGCGCGCCCACTCGAGAACCAAACACTCGCGCCAGCGGCCCAAGGGCTACGGCAAGAAACCCACAGAAAACAACTGGCCCGCCAAGTGCCCACACTGTTCAGAAGAGCTCCCCAACGGTCGCGAGTTTTGGCTGCACTTCCGGCGCGTGCACCCGGACGAGGAGTACCCCATCCCGAGGAACCACGTGTGCAATATTTGTGGAAAGGGATTTAAAAACAACGCGATCCTTCGGCACCACAAGCTGACGCACTCGGAGGAGCGGCGCTACAAGTGCAGCACATGCGGCAAGGCGTTCCGCCACCCCGCCAACCTCACGCTGCACGAGACGCAGACGCACTCGGACCGCCGCCCCTACCCCTGCACCATCTGCCAGAAGGCGTTCAAGGACAAGAGCGGGCTCAACAGACATGCACGGTCGCATACGGGATTGAAGCCATACACGTGCGAGTTGTGCGGCAAGACGTTCAGCCAGTCGAACAGCTGCAAGGTGCACATGCGCCACGTGCATCACCATCCCTCGCCGCCGGTGCCGTGGACGCCTGGCAACGAACAGGCCACGTCTGCAACACCTGCTACATCTGCAGAGTCTGTAACACCTAGTACACCTGCAGGAAGTGCTGCACCTACAAGAACTACGCCTGTTAGACCTGTACCATCCCCAAGACCTGCAATACCTATACTAGCTACACCTGCAACACCTGCAGCTAATACTAGGAGAAACACCAGGAACCGCTGA
- Protein Sequence
- MESLKVCRVCLVTDVKMYHLQTQPLGTYFENITDVNLLSTMALPLYACYECATLMKKYYDFKERCLRGQTTLYQILNNCGRITAQELQKVDRKNLQLSSDIAIQHLPEPIHCMHQDEFIKLCDIKTEPEDEMEHKISIELEEDIDNFPPPICSADVETVLHKSIEEEEIEKRKQIQDAVVAKLPPELKVQKLNHANMKEGAPNRIMDGQRAMPSNTREKPEDEIDLDKCVTITKLSADEQIEEIKKRQQSSNYMNSPFKCNLCYKGFLDAEAWKHHVEKHDPSAGELECPICKIRFKTKRTLKNHSANNHEKQYLCNTCSYVSKNVLQAKRHQRWHDGVTYTCPYCEDVFIKWTSYLSHVRIKHPSEFICGVCGYSFVSQMGLNSHKRLMHKDATENPEGEVKPEAGAYCEECDVKFVSEEAWKRHMVTSAKHTKINDFSGCRLCGETFESASQLRAHSRTKHSRQRPKGYGKKPTENNWPAKCPHCSEELPNGREFWLHFRRVHPDEEYPIPRNHVCNICGKGFKNNAILRHHKLTHSEERRYKCSTCGKAFRHPANLTLHETQTHSDRRPYPCTICQKAFKDKSGLNRHARSHTGLKPYTCELCGKTFSQSNSCKVHMRHVHHHPSPPVPWTPGNEQATSATPATSAESVTPSTPAGSAAPTRTTPVRPVPSPRPAIPILATPATPAANTRRNTRNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859719;
- 90% Identity
- iTF_00859719;
- 80% Identity
- -