Spin004007.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387641.1:1310436-1327149[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00043 0.035 15.2 0.3 1 21 182 202 182 205 0.90 2 11 4.1e-05 0.0034 18.4 1.0 2 23 213 234 213 234 0.97 3 11 2.2 1.8e+02 3.5 6.7 1 23 238 260 238 260 0.97 4 11 1.6e-06 0.00013 22.8 2.7 1 23 265 288 265 288 0.98 5 11 0.0035 0.29 12.3 0.2 3 23 295 316 295 316 0.96 6 11 0.0077 0.63 11.2 0.1 2 19 326 343 325 345 0.95 7 11 0.00031 0.026 15.6 1.2 3 23 354 374 353 374 0.96 8 11 2.6e-05 0.0022 19.0 1.0 1 23 383 406 383 406 0.97 9 11 2.7e-05 0.0022 19.0 1.7 1 23 416 438 416 438 0.98 10 11 2e-06 0.00016 22.5 1.0 1 23 444 466 444 466 0.97 11 11 0.0003 0.024 15.7 0.1 1 23 472 494 472 494 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATATAGTAAGAAAAGAGTGGCCTTTTTGCCTTGGATGCCTTGGCACACAGAAATTATATAATATGCAGGAATATCATCTCGTGGAAACTTACCAACTGCTGATGGGCTGTAAGCTGGATCAAACGCACCCATACAAAAAATCTGAAATGAACATCACAGAATACCCTGAACCCGAACCCAGTATATTACAAGTCATGCTAGCCTGCAAAACTGACATTCCATCAGTTAAAACTGAGACTGACGTAATACCTGAAGAAGAAATTAAACTAGAAAACGATATGGACATAGAACAACCAAAAGTAAAGAAAAAGAAACATAAAGAAAAAAATAAAAAAAATAAAAGAATTTTGAAATTGGAATCAGAGGAAAAAGAAAAAAATGACGAACCTGTAAAGTTTAAGCAAAAAGGTCGGTATTTTGAAACGAAAGAGAACATGACTAACTTCCAAAGGATATTTGATTGTGATATTAAAGTATTAAGTAAGGAGGAACAGATACAAGATATAAAAGAGAGAAGAGATGGCTTTAACTACCCTTACAGATGTGGTGATTGTTTTAAAGGTTTTATGGATGAAGCTAATTTGACCAAGCACAACTCGGCATGGCATGATGTGAGTAGAGGCGCCGCCGTGTGTGAGGTGTGTAAGATCCGATACAAAGACAAGCGCGATCTCAACCGGCATCTCAAGAGCCACCGGCTGAAGTTTACCTGCAGGCAATGTAACCACGTCTGTAAGAACACTTCAAAAGCAATGGAACATTTCAAGATGCACGGAGGACAGTTGTATAGATGTGATCACTGTGGCAAGACTTATGAAAAGCAGTCTACCTACCTAACTCATATGAGGGTAGTCCACCCATCAGCTCTGATTTGGTGCGAGCTCTGTGGGGAGTCTTTCGTCTCCAACTTTGGTCTCAATGGGCACAAGAAACAGGCACATAAAGAGCTCAAGTACCCACCCGACTCTACTTGCCTCATATGCAACACACAATTCATAACAACAGACGCGCTAAGGCGGCACGCAGACGCGGAATGCGGGTCTATCGCTAGCTGCGTTCATTGTGGAGAGAGCTTTAATACTCGACTATTACTAAAGGATCATCTAGTAACGCACAGACCGACAACTGTGGTTGGCAACTTTCCTTGTGTTAAGTGTAACAAAACGTTCCCGCGTCAGAATCTGTACAGCGCTCACTACAGGCGCGTGCACGCGGACTCCAGTCGGAGGAGGAAGCAGTTCATGTGCGAATTGTGCGGAAAGGCGCTGCCGAATAAATGCGAGCTGCGCTATCACCAAAGGACGCACACGGGAGAGAGACCGTTCGCCTGCCCGCACTGTCCGAAGAGCTTCATCAAACGGGCTTTTATGAAGGCCCACATGCGCGTACACTCCACGGAACGACCATTCGCCTGTAAATTGTGTCCAAAAACATTCAAAGGCCCCGCCGCTCTCAGCGGGCATCAGTATGTACACACAGGAATCAAACCACCAGTACGTCGGAAAAAGAAGGTGCCCTACGCAATAGACACTACTTTTTGGAAATAA
- Protein Sequence
- MENIVRKEWPFCLGCLGTQKLYNMQEYHLVETYQLLMGCKLDQTHPYKKSEMNITEYPEPEPSILQVMLACKTDIPSVKTETDVIPEEEIKLENDMDIEQPKVKKKKHKEKNKKNKRILKLESEEKEKNDEPVKFKQKGRYFETKENMTNFQRIFDCDIKVLSKEEQIQDIKERRDGFNYPYRCGDCFKGFMDEANLTKHNSAWHDVSRGAAVCEVCKIRYKDKRDLNRHLKSHRLKFTCRQCNHVCKNTSKAMEHFKMHGGQLYRCDHCGKTYEKQSTYLTHMRVVHPSALIWCELCGESFVSNFGLNGHKKQAHKELKYPPDSTCLICNTQFITTDALRRHADAECGSIASCVHCGESFNTRLLLKDHLVTHRPTTVVGNFPCVKCNKTFPRQNLYSAHYRRVHADSSRRRKQFMCELCGKALPNKCELRYHQRTHTGERPFACPHCPKSFIKRAFMKAHMRVHSTERPFACKLCPKTFKGPAALSGHQYVHTGIKPPVRRKKKVPYAIDTTFWK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859715;
- 90% Identity
- iTF_00859715;
- 80% Identity
- -