Spin011807.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387619.1:14188493-14197607[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0038 0.31 12.2 1.0 3 23 206 227 205 227 0.96 2 23 0.16 14 7.0 0.3 1 22 611 632 611 632 0.95 3 23 0.63 52 5.2 0.4 1 23 674 697 674 697 0.93 4 23 0.0096 0.78 10.9 1.9 3 21 708 726 708 727 0.96 5 23 0.38 31 5.9 0.1 2 23 735 757 734 757 0.89 6 23 0.03 2.5 9.4 0.4 3 23 778 799 776 799 0.96 7 23 0.0015 0.12 13.5 2.6 1 23 805 828 805 828 0.95 8 23 0.099 8.1 7.7 0.0 1 23 854 877 854 877 0.90 9 23 0.0043 0.36 12.0 3.5 1 23 882 904 882 904 0.97 10 23 0.014 1.1 10.4 0.2 1 23 910 933 910 933 0.95 11 23 0.00082 0.067 14.3 1.3 1 23 946 968 946 968 0.98 12 23 0.0042 0.35 12.0 4.3 1 23 1017 1040 1017 1040 0.96 13 23 0.045 3.7 8.8 3.5 1 23 1100 1123 1100 1123 0.95 14 23 0.00074 0.06 14.4 2.0 2 23 1149 1171 1148 1171 0.95 15 23 0.04 3.2 9.0 0.3 2 23 1177 1199 1176 1199 0.95 16 23 0.0078 0.64 11.2 0.2 1 21 1243 1263 1243 1264 0.95 17 23 0.00097 0.08 14.1 0.6 1 23 1274 1296 1274 1296 0.93 18 23 8.9e-05 0.0073 17.3 0.3 2 23 1384 1406 1384 1406 0.93 19 23 2.6e-07 2.2e-05 25.3 1.4 3 23 1413 1433 1412 1433 0.98 20 23 0.0076 0.63 11.2 1.2 1 23 1451 1473 1451 1474 0.96 21 23 0.11 9.3 7.6 0.0 1 23 1494 1516 1494 1516 0.98 22 23 0.0089 0.73 11.0 0.6 1 23 1522 1545 1522 1545 0.96 23 23 5.5e-05 0.0045 18.0 3.2 1 23 1553 1576 1553 1576 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAACTATGATCTTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCCGATGACTCGGAACCTCCCGTCCTTGCATCGAAAATTAAGGATTGCGTGTCCATACAGATAACCGAAAATGACGACTTGCCGACAAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATGTATTCAAGTCTGTATGTGAAAGGACTCAAAACAAACTACAGTCTCTGATTAATAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAGAGTGAACCATTATCTGATGAGGCCTATGATGATGGAGTTGTCATTGATGGATCATACCTTGACAGTGAGAATGCAACATCAAGTAAAGTGCAGCCAGAAGGGCCTCCAATCTTGGCGTCGCTGGGGCTCACGCCGAGGAGTGATAAGGGTATGGAGAGCGAAAAAGACGAAGATGAAGATGAGGAAGATATGAATGAATCGGCTCAATCCTACACCAAGGTTGCAAATATGCCCGAAGTTTCTATCACAGTGATGCGTCCCTCAGGTGAAACGTTACACTCCCGACAAGGTATCCAACAACTAGCATCCAAAGATTGTCTGGTTTGTGGAAGGTCTTATAGATACTCTCACAATGCCAGACGACATGAGCTAACAGCCCATAGTTTCGACAGGTACACCAATAAGATCACAACTAAGAAATCTCACATGCGTCTGCAACCTAAATTGAGACCTAACCCTTTCAACCCTAAGGCGAGATTAATGCCAAATCCTATTAGCCATAAAATGCAATATATACCTAAGAACATCCCAGCGAAAATAATACCCCAAAAGATCATCACCCCGCCGAAACCCATTCCGATTAAAACAGCAAAAGCTCTTCAGAATAATCTACCATATCCCCTTCGAATTAAAGCGCTCAAAGACTTACAAATAAAGAAAAAAGAGCCGCAGATTTTGAAAACTTTACTGACAGCAAAACCTGAAGTTTTGGTGTCGGAGCCGGAAATTATAAATTCCGGCCCGGAAAGTCCCGAGACGCTAATATCTGAACCGGAAATCGCATCATTCCAAGTAGAGGCTATATTGTCCGAACCGGACCCCGAGGCTTACGAACATCCCCAAGGTGACGATGAAGTCGACGGTGAAATGCACAATAACCAAAATCCAAACTACGACACCGTCGACATGGATTCAGAAAATGAAATTGAAATTGCCAGACAACGAGAACACGATCAAGATGGTGAACAAATGGATTCACACGAAAATATGCACCATGATGATGACAATAACATGGATGCTGGCCACAGTGATAATGAGAAGGAGCATAATGATGAAACTGTTGACAGTCAAGATCAAATGGTGATCGATGAGGGCACCGAAATTAAAACCGAGGACGACGTTGGCAAGGAAGTAGAGGAACGTAATGAAGAGAAAGAACCCGAGGAAAATGAACAAGAAATAAATAATGACGAAAATGATGATGATGACGAAGAGATGCCACCTATCGCGCCGGTGGTCGAGATTAATGAAGACATCCAAGGTAACTCTTACAACAGTGAGTTAAACGAAATAAATGAGGAGGAAGAAGAAGAAATTGACGAGACGGCCGATCCTAACGACACTGTCGACGCAAAAGAACTCGATCCCAACAAATTTTATGTGACAAAGACCCAAAGAGACTTTATTCGGAGGTACCGCGATGTCATCGAGCAAATTAATACAAAAAGATGTTTGTGCTGCGACCGAGAACATCCTCGACGGAAAGCAGTCATACAGCACTTACAGAAAAATGGACACAAAGTCCCCAAACATACATGCTACAATTGCGTCATTACATTTGGCCATATCGGGGCTTTGCTGAGCCATATGAGATCAAACTCATGTACTGATCTCTGGAAAATTATATACAACGAAAATGGTATTACCGATGACTTAGTTCTGCAAGATGAGCCTAAAGATACCAAGGTACAATATAAGGATATTTTCAACGCTAGATCCTACGCGTGCAAGTTGTGTCCAGCTAAATTCCAACTGAAGCAGTTTATAATGAAACATATGATGGACGTGCACGAAGATGGACAATCGAGGGTGCCCCTCGGCTGTGTCCATTGCCGAGCCAGATTCAAAGACAAGAATTTATTGAAAAAACATATTCGCAACGGTGAATGCACTGTTTATATATCTTGCGATTTATGTTCAGAAAAATTCGTAAATATGCAAGATTTTAATGACCACGCATTGGCGGTCCACGCCGGTAGTTTTGATCAGTCAGACAATGCCAACAAATGCGTAGACGGTCGGCCTACTGATTGCCCGATTTGTGGCAAGAAAAACCAAAACTACACACTTTTGGTAAAGCATTTGAAAACCATTCACAATGAAGAGAAACCACATTATTGCAAACATTGCGATGCCAAGTATGAGCAAGCTGCTGACCTTAACAAACACATTTATAAGGAGCATTCTGACAGATCAATGATCATGCAGAATAGTGAACCCGACATGTCTTTGGTGAAAGAGGAGGCTGAAGAATACCATTATTCTTGTACTGAGTGCAACGCCATATTTGAGACGGTCGACGCTTGGACCGATCACCAAGTCGCTGAACATAATCAGGTCGCTCACCACTGCGACCAATGTGACAAGAAATTCCTGCGCCCTTCGGAACTCGCCGAACACAAGAACACACATTTGCGTGTGAAATTCTACCCGTGTAGCGTTTGCTCCAACTCTTACAGCACGCCACAGAAGCTTTCGGAACACGTGCAACAAGCACATCCCGGGATTCGAACAACGGCCTCAGCAGAGTCTGAATTCTATTGCGACATTTGCATCAGATCATTCAAAAGTCGTCAGGCTTACTCTAATCATATGCGTATCCACGCGAAGGTACCGACCACTAACAGGAAACCGGGAGAACCTAAAAGCTTTGCGCCTCAGATTATTGGAAAACCGATCAAACAGTTTTCTATGATGCAGCCTGGAGTGGTCTCATTCAAGTCTAGTTACAATGTTCCTAATGCCCCGTATTGCTGCGACCTGTGTGGCAAAGGGTTTATGCATAAAAAGAATATATGGAAGCATAAGAAAGTGCTACATGCTGATATTATTAATGACAGAAACGACAGCGAAGAAAACACAATGCAGGCGTCTACTGAGGAGGAAGAATTCAACAATGAAGAAAATGGCACGGGTTTGTCGACGCCTCAATTTAACAGTTTCAATTTTGCGAACTTCTCGAGCAATTTACAACAATCGCAACAGGAGTCTATGCCTTACTCATGTGAGTTATGCTTCCAACGATTCCCGCTGCGAAGTAGTTTATGGAAACATAAACAACACAAGCATGGCATTATAAATTCCACCCTTGACGCCTCGGAAACTCATTCGCAAGCTTCAGGAGGTGATGGCAGTAGCAGGTCTAGTTGCACGATCTGCAAAATATCCTTCTCGGACAAGAAATCCTACTACAGACATCGTAAGAATGTCCACAAATCTTCTGTCCAAATGTGCAAATTATGTGGCAAGCCACTGAGCTCTACACTAGAACTGTATGAGCACTTGAAGTCTACTCACGCACGGGAGCTGTTGGGTTATAACGCAAACCAAGGGTCGAGCAAATCCCAAGAACCAGCTCAAGATATGGAACCCGATGACGACAATGATAACGAGGCCGCCGACCCGAGTGTCGATTATCAGGCAAGATACCCGTGCGACACTTGCGGTAAACAATTTGTCGGATTGCTTGCTTTGCAAAACCATCAATGTATCAACCAACTTCCTTCGCAACCGCAGACGTTCGACTGTGAAATTTGTCACAAGAGTTACACATCCATCGCCGCTCTGAAAAGTCATCGCGGTTGGCATTTGCGCTCGCCTGACGGTAAGGCGGCCGCCAACAATTCTGGCCTCTGGATGCCGCAGCACAAAGTCACCAATAAGGTGAGCAAATATGAGGTCGTAGACGCCGCGCAGTTCGCAAAAGTAACGCATTCAACTCCCGCCTCCGTCGCCAAGAGAAGATTACCACCCGAAGTGGAGGTGACAGTCGTCAACCCAAACAAGAAATTAAGATCTGACGATTCGATGGAAATGGAACAGCACAGTTCGGGCGCCGTCGAAGACAGGTACTGTACCATTTGCGACAAAGAGTTCACCAAACGCGCCGCGTACCAGCGCCACATGGACGAGGTTCATCAACCAAATTCGGTATTCTGTCCGGTGTGCGACAAGAGTTTCACCCGAAAGTCGACGCTGTTGGTGCACATGAAGAAGCATTACGAAGGTGGTGAGGGTAGTTCGTCGATGACTGCGAATATGGAAGACGAGTACTCGTGCGAGCTGTGCGGCGCGGCGTGTGAGAGCGCGAAGGCTCTGCGTATGCATCGCGAGCGGCACCACGGCGAGGACTCGGGCGAGTCGGAGGAGGAGTCGGGCGCAGTGCCTCCACCAGGCGAGTTCACATGCGCGCAGTGTGGCGACGGCGTGGCGACCCCGCGGGACCTCATCGCACACCGCAGCATGCACGCCACGCCCACCAACTTCTACTGCAACATCTGCAAGGTGTACTTCGCGAGGGCCCTCGACCTCTCCACTCACACCCGCGCCAGACACCCGGACTACAAAAAAGTATTCTTCCATTGCTCCATGTGCGACCGGTCTTATATGAATAAGAAGAATTTACAGAGACATATTGAAATGTCGCACTGA
- Protein Sequence
- MSVNYDLVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSIQITENDDLPTNVCRKCMDNVNNWHVFKSVCERTQNKLQSLINKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYLDSENATSSKVQPEGPPILASLGLTPRSDKGMESEKDEDEDEEDMNESAQSYTKVANMPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITTKKSHMRLQPKLRPNPFNPKARLMPNPISHKMQYIPKNIPAKIIPQKIITPPKPIPIKTAKALQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDPEAYEHPQGDDEVDGEMHNNQNPNYDTVDMDSENEIEIARQREHDQDGEQMDSHENMHHDDDNNMDAGHSDNEKEHNDETVDSQDQMVIDEGTEIKTEDDVGKEVEERNEEKEPEENEQEINNDENDDDDEEMPPIAPVVEINEDIQGNSYNSELNEINEEEEEEIDETADPNDTVDAKELDPNKFYVTKTQRDFIRRYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTDLWKIIYNENGITDDLVLQDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHMMDVHEDGQSRVPLGCVHCRARFKDKNLLKKHIRNGECTVYISCDLCSEKFVNMQDFNDHALAVHAGSFDQSDNANKCVDGRPTDCPICGKKNQNYTLLVKHLKTIHNEEKPHYCKHCDAKYEQAADLNKHIYKEHSDRSMIMQNSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGIRTTASAESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKSFAPQIIGKPIKQFSMMQPGVVSFKSSYNVPNAPYCCDLCGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMQASTEEEEFNNEENGTGLSTPQFNSFNFANFSSNLQQSQQESMPYSCELCFQRFPLRSSLWKHKQHKHGIINSTLDASETHSQASGGDGSSRSSCTICKISFSDKKSYYRHRKNVHKSSVQMCKLCGKPLSSTLELYEHLKSTHARELLGYNANQGSSKSQEPAQDMEPDDDNDNEAADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQLPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKYEVVDAAQFAKVTHSTPASVAKRRLPPEVEVTVVNPNKKLRSDDSMEMEQHSSGAVEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSMTANMEDEYSCELCGAACESAKALRMHRERHHGEDSGESEEESGAVPPPGEFTCAQCGDGVATPRDLIAHRSMHATPTNFYCNICKVYFARALDLSTHTRARHPDYKKVFFHCSMCDRSYMNKKNLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -