Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4e-09 5.6e-06 26.6 0.0 10 39 2 31 1 34 0.94

2 3 1.9e-12 2.6e-09 37.2 0.1 1 45 44 88 44 88 0.92

3 3 4.8e-11 6.7e-08 32.7 0.1 1 37 190 226 190 234 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4e-09	5.6e-06	26.6	0.0	10	39	2	31	1	34	0.94
2	3	1.9e-12	2.6e-09	37.2	0.1	1	45	44	88	44	88	0.92
3	3	4.8e-11	6.7e-08	32.7	0.1	1	37	190	226	190	234	0.89

Coding Sequence: ATGGAGGCAGTATTGAAAGACAAAATGTCACAACGCGCCGCAGCGATTCGTTATAAAATTCCGAGAAGAACTCTACGGCACCATTTGCAAACAGATCCAATTGCAGTGCCTTCAAAGCGAGCTACGTGGTCTGAAGAAAGCCTGCGAGCAGCCATGAAGGCAGTGCATGAAGGCCAGATGACACACTACGCTGCAGCGCAGCTTTATAATATTCCAAGATCAACGTTGTGGGACCATTTAACATCGGGACAAACAGTAAAAAGAACTGGACGTCATCCGGTTTTGAATACAGAGCAAGAAACGCTTCTCGCGAGCAGGTTAATAGCGAAAAACAAGAAGTTAACATCTAAAATGATACGTAGAGAAGCATTTATTTTCTGCGAGGAATACAAATTGAAACACAGATTCAATAGAAAATCTGGACTAGCGGGCAATGACTGGCTCAGGATGTTCTTAAAGCTGGCAAACGTACGGTCAAAGCGCGGGAAACAATGGTTCCGAATAAAACCTATTTCTACTGTTTTATTATCCGATTCAATTACGTTGCCTTCAAAGCGAGCTGCGTGGTCAGAAGAAAGTCTGTGTGCAGCCATGGAGGCCATAAAAGAGGGCAAAATGTCACAATACGCTGCAGCGGAATTTTATAATATTCCGAGAACGACATTGCGGGACCATTTGATATCGGGGAGCACCATAAAGAGAACTGGACGCAACCCAACCCTGAATATGGAGCAAGAAAAGGATCTCGTGAGCAGGTTAAGAGCCAAAAACAAGAGATTGAAATTAACATCTGAAATAATATGTAGGGAAGCATTTATTTTTTGCGAGGAACACAAATTGAAACACAATTTCAACAAAAGAGCCGGCCTGGCGGGCAAAGACTGGCTAAAAACGTTTTTGGAGCGACATCCTGAAATTTCTATCGTACAAATACAGCGGCATGCGACTACGGTTTAG
Protein Sequence: MEAVLKDKMSQRAAAIRYKIPRRTLRHHLQTDPIAVPSKRATWSEESLRAAMKAVHEGQMTHYAAAQLYNIPRSTLWDHLTSGQTVKRTGRHPVLNTEQETLLASRLIAKNKKLTSKMIRREAFIFCEEYKLKHRFNRKSGLAGNDWLRMFLKLANVRSKRGKQWFRIKPISTVLLSDSITLPSKRAAWSEESLCAAMEAIKEGKMSQYAAAEFYNIPRTTLRDHLISGSTIKRTGRNPTLNMEQEKDLVSRLRAKNKRLKLTSEIICREAFIFCEEHKLKHNFNKRAGLAGKDWLKTFLERHPEISIVQIQRHATTV

Sequence clustering based on sequence similarity using MMseqs2