Basic Information

Insect: Sphenella marginata
Gene Symbol: -
Assembly: GCA_951509765.1
Location: OX608079.1:11093837-11095811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.8 2.7e+02 3.8 7.0 3 14 267 278 265 294 0.79

2 7 0.0023 0.35 12.9 1.1 2 23 296 318 295 318 0.95

3 7 1.6 2.4e+02 4.0 2.3 2 23 322 342 321 342 0.92

4 7 0.11 17 7.6 0.0 2 20 348 366 347 367 0.95

5 7 0.0081 1.3 11.2 0.6 2 23 399 421 398 421 0.92

6 7 0.22 35 6.6 2.4 1 23 517 539 517 539 0.92

7 7 5.9e-05 0.009 17.9 4.7 3 23 547 567 545 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.8	2.7e+02	3.8	7.0	3	14	267	278	265	294	0.79
2	7	0.0023	0.35	12.9	1.1	2	23	296	318	295	318	0.95
3	7	1.6	2.4e+02	4.0	2.3	2	23	322	342	321	342	0.92
4	7	0.11	17	7.6	0.0	2	20	348	366	347	367	0.95
5	7	0.0081	1.3	11.2	0.6	2	23	399	421	398	421	0.92
6	7	0.22	35	6.6	2.4	1	23	517	539	517	539	0.92
7	7	5.9e-05	0.009	17.9	4.7	3	23	547	567	545	567	0.98

Sequence Information

Coding Sequence: ATGGCGGGAAATGGTGATATTATGGATGGTATAGAACCATGCCGTACATGTGGTATATTCTATTTAACAGCATCAAATTTTTTGCGCAAGATGTTCGATGCCCCCAACGAAGAGCAAAATTTAACACACATTCGTACGGAATTATCGGCATGGAGTATACAAATAAATCAAGATGATGGATTACCACAGTACATTTGTACTTGCTGTATTCTTGAATTTCAAAAACTATTCAAGTTTAGGGAACTTTGTGTCGAACTGCAAACACAATGGCGGCATTTCTATCAGATACGccaagaaaacaaaatatttataaaaaaggagTTACCCGATCCAGATGAGAAAACTGAAGAAAATAATTGCGATTTCATTTACGTAGATGATTTAAGTGATAATGAGTACAATTCGCAGGAAAATAGTAGTCGCAGCTTTGCACCTTTCAATATTTCTCACGTTCCAATTAAGGAAGAACCACAAGATAACCATGCCATACCagattataatttaatttcaagagaaaaagaaacattaaatattaataatggGGATAACGTAGAAGGTTCTGAAGGAACGAATGACATAAATGAAGTGACCCAAATGTGTAATTCGAATTCAAATGAGTTTGATTCGTCAAACCACGGCCATCTTTTGGATGAAAACTTGAGTGAGAATACATATTCGCAAAATAATCAAGACAATGATGTTTCGTCAATTGAATGTAATTTATGTTTACACATATCCGCCAACGCGGACTTGCATCGACAACATATGCAGCGAATTCATGAAATTAAGGACATGGACTGTCATATATGTGGTAAACAATTCAAAAGCTCGACGGCAAATCGCCTTAAGTATCACTTGAAATGGCATAGAATAAGTAAGCACATCAAATGTGCGCAATGTGGATTCTTTTGCGATTCGCGCGACACACTGAGGGAGCATATCAGGGCTATGCATTCAAAGATTGAATGCAGCACATGTGGTAAACGTGTTTTggggaaaaaaatgaaaatccaTATGCGTTCGCATGAAGTGAGATCATGGCCATGTTCCTATTGCAATGAcgtgtTCGGTACAGAAAACTCACTTGAAGCTCATATCTGGGAAATACACGCACAAGAGGAGACACAGCCTATTGCAGTAGCCGCCGAAACTGCAGAAGATAACGATCTACCAGCAGAAGAAGAAGGACCTTTGTCTTGTAATTTATGCGATCAGCTTTATCCGAACCAACATGAGTTAAATGCACACAAGCTAGAATCTCATTTAATGCAAAATATTACTGAGACTGAAGCATGTGACACTCTTGAACCAGTATCACAAACTGGCCAATTTAATTATCAAGACACAACAGATATGATGGAAATGTCTGTgacaaatttggaaaatattaaCGAAAACGTTTCAACTGGAGTCGAAGAGTCAAATTCAACGCAGctccaacaacagcaacaagaacCAACAAATTCCTTAATCTCTAATAATAACGAATTTACACAAGTAATATCTTCTGATGAAGAAGGCGGAGGTAAAAACGAGAACCTTGTGgaatatgattgcccaaaatgtGCACAAAAATTTACAAGTACAGCAGATCTTTGTTTTCATTATCAAGACCATGTGGATAAATCACAATTTGGTTGTCATTTTTGTGGAAAatcgtttaaaataaaattcagcctGAATCGTCATTTAAAAAGACATAAATAA
Protein Sequence: MAGNGDIMDGIEPCRTCGIFYLTASNFLRKMFDAPNEEQNLTHIRTELSAWSIQINQDDGLPQYICTCCILEFQKLFKFRELCVELQTQWRHFYQIRQENKIFIKKELPDPDEKTEENNCDFIYVDDLSDNEYNSQENSSRSFAPFNISHVPIKEEPQDNHAIPDYNLISREKETLNINNGDNVEGSEGTNDINEVTQMCNSNSNEFDSSNHGHLLDENLSENTYSQNNQDNDVSSIECNLCLHISANADLHRQHMQRIHEIKDMDCHICGKQFKSSTANRLKYHLKWHRISKHIKCAQCGFFCDSRDTLREHIRAMHSKIECSTCGKRVLGKKMKIHMRSHEVRSWPCSYCNDVFGTENSLEAHIWEIHAQEETQPIAVAAETAEDNDLPAEEEGPLSCNLCDQLYPNQHELNAHKLESHLMQNITETEACDTLEPVSQTGQFNYQDTTDMMEMSVTNLENINENVSTGVEESNSTQLQQQQQEPTNSLISNNNEFTQVISSDEEGGGKNENLVEYDCPKCAQKFTSTADLCFHYQDHVDKSQFGCHFCGKSFKIKFSLNRHLKRHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00993118;
90% Identity: -
80% Identity: -