Smar037609.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- -
- Assembly
- GCA_951509765.1
- Location
- OX608081.1:76166131-76170272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.07 11 8.2 0.9 1 23 398 421 398 421 0.86 2 10 0.39 60 5.9 0.5 2 16 429 443 428 445 0.89 3 10 1.5e-06 0.00023 22.9 1.6 1 23 484 506 484 506 0.99 4 10 4.5 6.9e+02 2.5 0.4 2 20 515 533 514 537 0.85 5 10 0.28 42 6.4 1.7 2 23 544 566 543 566 0.94 6 10 0.0019 0.3 13.1 3.2 2 21 579 598 579 599 0.94 7 10 7.3e-05 0.011 17.6 5.0 1 23 630 652 630 652 0.96 8 10 0.00017 0.026 16.5 0.3 1 23 657 680 657 680 0.93 9 10 0.00029 0.044 15.7 1.5 2 23 687 708 686 708 0.97 10 10 0.34 53 6.1 3.8 3 23 749 769 747 769 0.94
Sequence Information
- Coding Sequence
- ATGGAACAGGTTGCCCACGTAGAAGCGTGTCGCCTTTGTGCAAATTACTATGTGACCGGCGCCGAAGTGGAATTCGTGCATCTTTTCGAGCCCATAGCTGGACTtgaacaacaattgcaatttttacatACACAAATAAACGCCTGGCAGCTGAATATTATATTAAACGATGGTTTACCACAACGCATTTGTGCTAACTGCTTCAATCAATTTTGCAATTTACAAGCATTCCATCAGCAATGCGTTTTAggacaacaaaaacttttacaaCAATTTGTGGGCGTTGGTTTGCCTGTAAGTGTTGCAGCCTCTGCTGATGTCAACAGCAAAACGCAACAAGGAACCGATGACCACATAGCAAATCTAAATAATTCAAATGGATTATTGGATGGTATGAAAATTGATACACCCGTAACAAGTGCAGAATTAATGGCAACTTTAGATTGTTTACAACCACCGACAACAACTAGTGCTGACGTCATAGCCAGTTTAGACGGCTTACAATTGCCTGCAAGTGTCGCAGAAACATTATCTCTGTTGACGCAGGATTATACAACAATACAAAATAATTCCTTACTAGATACCAGTGGCGGTAACTCAATTACTACACATGCAATCATGGATACAAAAACCGAAGAGACCAATGTGTTGCAATTAGCAGCAGCATCATCAATGCAAAATATTTACTATGCACAGCAGGCTCCTATTGCGGCAGTGCCTGCAATGAATGAAAATCCAATGACTTTAGTAACAAATGTAACAGCAATAAATGCAAATGGAACAGTGAAGAACAGCGAGAAAGCAGATATTGATTTGGAAGATATGCTGCAAGGTAGCATAATACCCAAAAATTCGTGTACAACACCTGTACAGGAAACTATACAACAACAAGTGTATAAAAAGAAAACTCAAGCGAAAGATGTATTTGAGGATGATTTGCCGAGAAGTGTTTCGTCCATAGAGGATTTCGAAGATGAAGATATGGATTACCTTTCATGCTCCGAACCAAACGGTGACGCGGAGGATTTAGAACCGGAAGCTGATGAAGGTGTGTCGACACGTATTTCGGGCAATCCATTGGCTTGCCAATATTGTTATTGCCCGAACTCAGGATCTATTGATCACCTCTGTTTTGAAAGCTCCGATGAACTGTCACAACACTTTTTTGACGTACATGATCCGAATTTGCCCTATACATGCCCATATTGCTCACAAAAATACAGTTCGGCTAGGCAACGTGATTACCATGTACTTCTCCAGCATTCTGCCGTATCGAAAGCCGATCAATGTGACTATTGTAAAAAGACCTTGCGAACAACCAAAGAGTTGCACGAAATTAGCTGTCAGTTTATAGGCGATTGGCGTTGTGAAACGTGCGACCATTGGCTCTTTCAAACGCCGTTGTGTCGTTTTCGCACACATCAGCGTAATCATACTAAACCTAAGCATTTTAAGTGTCGCGATTGTGACCGTGTATTTGTACGTCGTGCAAATTTACATGCTCATGAACGTATGCATCTTCCaaatccaaatttaaaaattaaatgtgaacAGTGCCAAGCAGTATTTTTGAATGACTATGAAATGCGTCGTCACAACTATCAATCTCATCATGGCGATCTGCCAGTGCGTTGCGAATATTGTATGAAAGGCTTCGTCAGTATGGCCTTTTTAAGTCGCCACACACAACACTTTCATCCTGAGAGATTGCGTGGCCGAAATTTTAATGCGGCCACTTGTACTAATTGCGGTTGTACTTTCAGTTCATTGCATAAGCTGCGCATCCATATACAACGGCCACGTGATGAGAATGGTCGTTGCATGGAAACTGTGCGTACAATTGCGCCAATACAAGATCGTTCAAAACAAATGCGTCGTCAACGTTTGCATGCTTGTCAGCATTGTAATAAACGTTTTTCAACGCAGGCTACGCTCGATAAACATTTAAGCACGCACGAATCGCCAACGTTTAGTTGTAATGAGTGTACAACGACTTTTCAGAATGCACCTGAGCTGAAGCGTCACATTACGGATGTGCATTCCAGACCACGTTATCTCAAATGTGATCAATGTGACAAACGTTTCTTTTACATGCGTGAATTGCAGGCACACGTGAAAAAGCATGCCGAGGAAGTACAATCACCAGAGAGTAGGCTACTCTGTCCCGTTGTTGGTTGTGGCTATGAGGCAAAGAGCAGGCAAAATGCTTACGAGCATACGCTTGTGAAACATAAATATATTGCCTGTGAATATTGTCACTGTTTCTTTGTACGCAATCGCTTGGCCACTCATATGCGTACAATGCATTCTGCTGAAGTCGCAGCTAAAGaagcaaataataataacattagCACAATACAAAGCGCGCACGAACTACAGCTAAGCAATTCCTTACCGACACCGACCATAATAAATAGCAACGTTCAAatgaataacaataacaatgataATATAATGTCATCATTCGAAAATGGCATCGATAATGTCGGGGAGAAAGTACGCGTCGAattagtacaacaacaaacaccaaaTCTTAGTCAGGTGGTGTTGCAAGAGCAAACACCAAACACCTTTAAACAACTCCTACAAACGCCTGTTGAtgatatagaacaaaattttttaatgagttCACTGCTTGATGCTGATCATGAAATTATAGTTACATGA
- Protein Sequence
- MEQVAHVEACRLCANYYVTGAEVEFVHLFEPIAGLEQQLQFLHTQINAWQLNIILNDGLPQRICANCFNQFCNLQAFHQQCVLGQQKLLQQFVGVGLPVSVAASADVNSKTQQGTDDHIANLNNSNGLLDGMKIDTPVTSAELMATLDCLQPPTTTSADVIASLDGLQLPASVAETLSLLTQDYTTIQNNSLLDTSGGNSITTHAIMDTKTEETNVLQLAAASSMQNIYYAQQAPIAAVPAMNENPMTLVTNVTAINANGTVKNSEKADIDLEDMLQGSIIPKNSCTTPVQETIQQQVYKKKTQAKDVFEDDLPRSVSSIEDFEDEDMDYLSCSEPNGDAEDLEPEADEGVSTRISGNPLACQYCYCPNSGSIDHLCFESSDELSQHFFDVHDPNLPYTCPYCSQKYSSARQRDYHVLLQHSAVSKADQCDYCKKTLRTTKELHEISCQFIGDWRCETCDHWLFQTPLCRFRTHQRNHTKPKHFKCRDCDRVFVRRANLHAHERMHLPNPNLKIKCEQCQAVFLNDYEMRRHNYQSHHGDLPVRCEYCMKGFVSMAFLSRHTQHFHPERLRGRNFNAATCTNCGCTFSSLHKLRIHIQRPRDENGRCMETVRTIAPIQDRSKQMRRQRLHACQHCNKRFSTQATLDKHLSTHESPTFSCNECTTTFQNAPELKRHITDVHSRPRYLKCDQCDKRFFYMRELQAHVKKHAEEVQSPESRLLCPVVGCGYEAKSRQNAYEHTLVKHKYIACEYCHCFFVRNRLATHMRTMHSAEVAAKEANNNNISTIQSAHELQLSNSLPTPTIINSNVQMNNNNNDNIMSSFENGIDNVGEKVRVELVQQQTPNLSQVVLQEQTPNTFKQLLQTPVDDIEQNFLMSSLLDADHEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00993091;
- 90% Identity
- -
- 80% Identity
- -