Basic Information

Insect: Sphenella marginata
Gene Symbol: ush
Assembly: GCA_951509765.1
Location: OX608080.1:23393402-23405036[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 1.9 10.6 0.1 1 20 290 309 290 311 0.90

2 9 0.00045 0.069 15.1 0.8 1 23 372 394 372 394 0.98

3 9 0.081 12 8.0 0.8 2 20 427 445 427 447 0.92

4 9 0.077 12 8.1 2.9 2 21 877 896 876 897 0.93

5 9 0.014 2.2 10.4 0.0 3 21 943 961 941 962 0.91

6 9 0.39 60 5.9 0.1 1 23 1048 1070 1048 1070 0.93

7 9 0.022 3.4 9.8 1.3 1 23 1076 1098 1076 1098 0.99

8 9 0.0011 0.17 13.9 0.6 1 23 1169 1192 1169 1192 0.96

9 9 0.67 1e+02 5.1 0.7 2 20 1327 1345 1326 1347 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	1.9	10.6	0.1	1	20	290	309	290	311	0.90
2	9	0.00045	0.069	15.1	0.8	1	23	372	394	372	394	0.98
3	9	0.081	12	8.0	0.8	2	20	427	445	427	447	0.92
4	9	0.077	12	8.1	2.9	2	21	877	896	876	897	0.93
5	9	0.014	2.2	10.4	0.0	3	21	943	961	941	962	0.91
6	9	0.39	60	5.9	0.1	1	23	1048	1070	1048	1070	0.93
7	9	0.022	3.4	9.8	1.3	1	23	1076	1098	1076	1098	0.99
8	9	0.0011	0.17	13.9	0.6	1	23	1169	1192	1169	1192	0.96
9	9	0.67	1e+02	5.1	0.7	2	20	1327	1345	1326	1347	0.91

Sequence Information

Coding Sequence: ATGTGCTACGCGCATTGCACTCAATTACGAGCGCGCACCTCCACCGAGCGCAATAAGCAGGCGCGCACACCTTTAGTGCAattcaccaccaccaccacacgCGTTGTTACTTTGTCGCAGTTGCGCGATTATTCAGATATAGCGCGGCATATAAGTTGCAattCCAAAGATCTGAGTCCCACCGACCTAACAGATGAAAAACATCACATAAATCCCGAAGATGAGCGCATTGTAGAGACTGACACTGAACTTGAAGCGGAAGATGCAGACAATCGAGATGATGCTAATCAAATGCGCCAAAGAAATGTACGTCGAAGATCGCCTGCAATACGATTAGAAAGTAATGAAATCCAACGCCCTACAAGTACGCCAACCTCTAACGGCTCAAACACTACCGAATCATTCCATAATTCTAATGAATCCACAGAACATAAAAGAGTAACAGATATAGCAAGCGAGGAAATGGTAGCACACAGTGATATGTCTATTATGGAGACGAATGTAAAAGATACACGTTCGACTAGCAAAAGTCCACGTATACCGGACACGAATGCGTGCAATGAGACACCACCAGCACTCTCACCACCTACAGTTTGTTTACCAAAATTACGCTTGAATGCGTTATTGGCTTCCGATCCTGCACTTAAAACTGGGGCAAAGGACTTGAAAATTTTACACGAAGagacacaaacaaaaaatcgacTCGCACAACTACCACCACCACCGGCGCTCACCAAACAAGAAGACATTGAAACGTTAATAAATGTGTCAGCGGTTGAACCGGTGCTGAAGTCGGGAGTGGCTGGTACAACAGGCGCCCCACAGCCGCCAAGCACGGCTACAGAGAACGCACCGCGCATGAAATTATTCATGTGCCTACCTTGTGGCATTCACTTTAGTTCGCCATCGACATTGGAGGCGCATCAGGCTTACTATTGCTCACATCGTAATAAAGATATGGATGTTGAAGGCGCTTCTTTATCGACGGTTATAAGCGAGAAAACTGGTGGTGTGAGTAATAATTCCACTAGCGGCTCGAATAGTTCTAGCAATGCTGGTACACACAATAGCAGCGGTGAACCCACTGCCAAAGCAATTAAGACTGGCAAACAATATGCGTGCACCCAATGTTCCTACAGTGCCGACAAGAAAGTCTCACTCAATCGACACATGCGTATGCATCAAACATCACCGGCGCATAGCAGTAGCGCACCACCGTCAAATGGTGCCGCAGCCGGTGCATTAGAAGAAGTTGGTTCTAGTCAACAAACTGATCGTTATTGTAGTGATTGTGATATTCGTTTCAATAATGTCAAGACTTATCGTGCTCACAAACTGCATTACTGCAACTCACGTCGTTCGGAGGGCCAATTAACACCGAAGCTGGAAGTAAGTACAGCTAACGTCATTAAGACGCCCATAGGCGCAGCCGCCATCAGTCCACAGACACGCACTAAAACACCGACGCCTGCAATGGTAGCCGCTGCTGCCGCGGCAGCTGCTGCTGCAGCCGCTTCTTTACAAGCCACACCACCGCCACAGCCATTTTTGGCATTACCCACTAATCCGATATTGTTAATACCCTGCTCACTGATACGTGCTGCAAGCTGGATACCCGGACCACTCACTGCTGCATCTGCAGGCATTCCAAACCCAGACAACACCTGTTACATGTTGGATAGTGGAAATTTGAAACCACTTGCCACCGCTTTGAATATGGGCGGCCTTAACGCTAATACATCGCCtggtaataacaacaacaatgcttcCAATACTTCTAATCTTAATAACATACCACAAATGCCAACAGTTGAAACACCGCCAGCACGACAACCATCAATGCCGAGCAGTAACGCTGAGGTGCTATTAAGCGAGAAAAATCTGGGACGTAATGTGGATCGCAGTGAAACTTCGACACCTAAACGGAAAGATGGTTTACGTGAGTCTGCGCCATTGGATCTCTCGCTACGCCGTTCACCCACCTCCTACATTGCCAGTTTACAAAGGCAGCGTTTACAATCGGCTTCGTCCTATGCAGATTCCGAACATCAACGCATGGATATGGATACCCTATTGGAGGCGAGCAAAGAAAATCTTTCAATGGATGAAAGTGGCACCGTAACACCCGAACAAATAGTTTGTGCGCCCTCGCTACCGAATAGTCCTTCAATGAGTCCATCACCAAAACGACGTGCAATCAGTCCACGCAGTTCGGGCGCAGGCAGCACATCTTCCATGTCACCGCCAGTCAACGTATCCACTGCATCATTAGTCGCCGCTGCGGCTGCAAGTAATATGTTAGATTTACCGCTACGTTCCATGTTACCCGCCGATCTAGCTATGAAACTATCTGAAGCTAATATAATGAATCCATTGCTTGCCaagcaaaattttgaacttGCTTTGAAACTCTCTGCTGCAGCAGCGGCTGCCGTTAACAACAATTCACCACCAGGTGTACATAGTGGCTCTACACCCGCTGACTTGGCTGCGGCAGTTGCGGCTGCAACTGGGAAATCAACATTGCTTGGCTTATCGGGTTTGGGAAACTCTGCAGCTACGGCGGGCAATAGCAATGCACCAAACTCTGCAGTGCAACCGCAAATTTATGTTAAGCAAGGCGTCTCGAAATGCAAAGAATGTAATATTGTATTTTGCAAGTATGAAAACTATTTGGCACACAAACAACACTATTGTTCGGCACGCAATCAGGATGTGGCTGAAGGTGAGACTAAAGCGGGCAGCTCATCACCTTTGGgcgttggtggtggtggtggtgctatAGCGAATGTTGAAACTGCACCGGTTGCATATCAACAGCTGATTTGTGCTGCTTGTGGCATCAAATACACATCGTTGGATAATTTGAGAGCTCATCAAAACTATTACTGTCCCAAAGGTGGTGGCACGGCAGGTGCAGCAGTAGTAGCcgcggcagcagcagcagccgcAGATGCTGGACAACTACCACCGATCAAGGATAAGTGCGGTAAATGCAAAACGTTACATGAGTTGGGTTTACCATGTCCACCACCGCCAGCTCTTCAGCATACACAAAGTGGCGCACAACATTTGTCTAGCGCTGCTAATGTCAACATGACGGCGTCGTCATCATCGCTGGCATTGACTAATCAAAATGTCTATAAATGTCCCGTTTGCGATGTGGTTAGTTTGACAGCAACCGAGAGCCGGAAGCACATGGAGACGCATGGCACAGTGAAGGCGTTCCGTTGCAGCATCTGCCGTTATAAGGGCAACACATTACGTGGCATGCGTACCCACATTCGCATGCATTTCGACAAAAAAGCCACGGATCTCAATGAGGAACATTATATGTCTTGTATACTGGAGGATGATGGCATGGAAATACCCAGCATTGCATCGACATTGAATCAAGATCAGTTAGCACAACAAATAGCAGCtgtgcaacagcaacaacaacaactacaacttcaagcacaacaacagcagcaacagcaacaccaacaacaacaacagcaaatatACAATTGTGATTTATGCAATTACTCATCGTCCTATAAAGGCAATGTGTTGCGTCATATGAAATTAGTACATCCACATATTAATATTAACTCACCATCAATTTCACCTGAAACTACTGAGCTGGATACCGGCGATGTGACTTGTTTGAATGGCGAAACTGGAAGCTTCCATATCAAAACTGAACCACTCGATCAGCCAGTCAATCCAACAAATTCAACACAAATCCTAGACAATAACAATACGAGCATCTTGGCTAATACCTTAACGGCACCACCGCCCCTAACCAATAATCTCAATGCCGAACAAATGCCACACATTAAAACCGAACCGTTAGACATTGGAAGCGATCAAATACCAGCAAACCAAACAACACTACCACCACCAGCACTTACCGGCTCACCAGCAATTGGACCACCACCACCACTCAATGCTGCCACCGATGAGAATGCCACTGCGgcaacaacaaatcaaaaatattgtcAAACATGCGATATTTCATTCAATTATATGAAAACATATTTAGCacataaacaattttattgtaaaaataaattaagacgaCCCGAAACCAACGATAGTCCCAGTCCAAATGCTGGTCATGTAGGCATGACGGTGGCATCACCCAattcgcttttgttgttgcaaaaaaataaagagaATCTGCAACAAGAGGCAGCCATTTGA
Protein Sequence: MCYAHCTQLRARTSTERNKQARTPLVQFTTTTTRVVTLSQLRDYSDIARHISCNSKDLSPTDLTDEKHHINPEDERIVETDTELEAEDADNRDDANQMRQRNVRRRSPAIRLESNEIQRPTSTPTSNGSNTTESFHNSNESTEHKRVTDIASEEMVAHSDMSIMETNVKDTRSTSKSPRIPDTNACNETPPALSPPTVCLPKLRLNALLASDPALKTGAKDLKILHEETQTKNRLAQLPPPPALTKQEDIETLINVSAVEPVLKSGVAGTTGAPQPPSTATENAPRMKLFMCLPCGIHFSSPSTLEAHQAYYCSHRNKDMDVEGASLSTVISEKTGGVSNNSTSGSNSSSNAGTHNSSGEPTAKAIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSSAPPSNGAAAGALEEVGSSQQTDRYCSDCDIRFNNVKTYRAHKLHYCNSRRSEGQLTPKLEVSTANVIKTPIGAAAISPQTRTKTPTPAMVAAAAAAAAAAAASLQATPPPQPFLALPTNPILLIPCSLIRAASWIPGPLTAASAGIPNPDNTCYMLDSGNLKPLATALNMGGLNANTSPGNNNNNASNTSNLNNIPQMPTVETPPARQPSMPSSNAEVLLSEKNLGRNVDRSETSTPKRKDGLRESAPLDLSLRRSPTSYIASLQRQRLQSASSYADSEHQRMDMDTLLEASKENLSMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVSTASLVAAAAASNMLDLPLRSMLPADLAMKLSEANIMNPLLAKQNFELALKLSAAAAAAVNNNSPPGVHSGSTPADLAAAVAAATGKSTLLGLSGLGNSAATAGNSNAPNSAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQDVAEGETKAGSSSPLGVGGGGGAIANVETAPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAGAAVVAAAAAAAADAGQLPPIKDKCGKCKTLHELGLPCPPPPALQHTQSGAQHLSSAANVNMTASSSSLALTNQNVYKCPVCDVVSLTATESRKHMETHGTVKAFRCSICRYKGNTLRGMRTHIRMHFDKKATDLNEEHYMSCILEDDGMEIPSIASTLNQDQLAQQIAAVQQQQQQLQLQAQQQQQQQHQQQQQQIYNCDLCNYSSSYKGNVLRHMKLVHPHININSPSISPETTELDTGDVTCLNGETGSFHIKTEPLDQPVNPTNSTQILDNNNTSILANTLTAPPPLTNNLNAEQMPHIKTEPLDIGSDQIPANQTTLPPPALTGSPAIGPPPPLNAATDENATAATTNQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPETNDSPSPNAGHVGMTVASPNSLLLLQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00993090;
90% Identity: iTF_00993090;
80% Identity: -