Smar037156.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- -
- Assembly
- GCA_951509765.1
- Location
- OX608081.1:69157893-69160069[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.039 6 9.0 2.7 2 23 244 266 243 266 0.94 2 10 3.8 5.9e+02 2.8 0.4 6 23 275 292 275 292 0.97 3 10 0.00013 0.02 16.8 1.3 1 23 298 321 298 321 0.98 4 10 0.0046 0.7 12.0 0.7 1 23 329 352 329 352 0.97 5 10 0.00039 0.06 15.3 0.2 1 23 358 381 358 381 0.94 6 10 1.1e-06 0.00017 23.3 0.4 2 23 388 410 387 410 0.93 7 10 0.42 65 5.8 3.3 2 23 419 440 419 440 0.97 8 10 0.0051 0.79 11.8 2.8 1 23 449 471 449 472 0.96 9 10 2.4e-06 0.00037 22.3 0.7 1 23 477 499 477 499 0.98 10 10 0.041 6.3 9.0 8.3 1 23 505 528 505 528 0.91
Sequence Information
- Coding Sequence
- ATGATTTGCCGTCTATGCTTAGATGAAtcagaaaaaatttttgaacttttctcaGAGTATGGGGAAACAGAAATTGCGAAAACTATTACCAAGTACTTTCATATCGAGgtTCAACCGCAGGACATTATTTCTACTATAATTTGCGCAGAATGTTGGCAACATTTATACGATTTCGATAAGTTTTGGTTAAGTAtagatgaaaaacaaaaaactcttCAAACACAACTTGtatttacacaaataaaaaaagacgTTGAGGATGACGAGGTTGCAAATGAAACAAACACAAATCTGGCCATTGAGCCTAAAAGCAATGAACTAGGTGAGCCGGAAATCGACTTGGTTATTGAGCCGCCTATCTCTTTTTCTGAGGGCCTGGACTTTGAAGCAGTTGAAATGAAAGATGACACATCAATGGATGGCGATTCATTTGAAGGACCCATGAATGCACCAGCCAATGACAGTACATGTGAAGAAAACGCAATAGAATTTCAAACTACTAAAAAGCGAAAGTACACCAAAAGAGTACTTAACCCagctaaaactaaaactaagaaAGTTTTGAAGAAAACCCTGCGttcgaaaaggaaaactaataaaaatgatAGCGAGGAAAATATCCCACAGGGAAACGACTCCAACtcagtaaaagaaaaaaatacaaaaaagcaCGATACCCAAGCTATAATACGGGAACTAGACCAATTTATAGCTGAAAATACCCAATTAAGCTGTTGCATATGCTCTCAATCTCTAACAGACTTCAATGACTTGAAAAAGCATTTTAGGCAGGCGCATAATTGTGTGGGCTATGTACCTTGCTGCGGAAATCGTTATCGGAAAAGAACATTATATGTAGATCATTTGAAACTGCATAAGGATCCCGACTTTTTCAAgtGCACGCTATGTAATAAACAATTAGCAAGCCGGAACAACTATCAAAATCATATGGACACAATACATCCGAACACCGAAAGTTTACTCTATCCTTGCAAATTGTGTCCTCGAAAGTTCGCGAAACAATATATTTTAGACTATCATATTAGATCTAGGCACACAACcacgaaaaattttgtttgcacaACTTGTAACAAAGGatttattaATTCAGCAGTTTTAAAGCAGCATGAAAAAGCAgtacatttaaatacatatgatTCTGTTTGCGAAATATGCGGCAAGTGTTTTAAAACAGCGCAAAATCTTGTATCTCATATGGAGGCCATTCATAATGAAACACCTCGTCCCGAAGAGCAGTGCAAAATTTGTCTAAAATGGTTAAAAAATACACGTTGCCTTAAAAAACATATGATTGTTCATCGTGATCAAGAATCTGGACAAGAATTCAAATGCCCCCAATGTGGCATGGAAAAGAATACTCGGCATGCCCTTTCGGCTCACATACGTTATCATCATTCTGACAAAGTTTTTACATGCACAATGTGtggcaaagaattcaaaaatccTCGTGCACTTAagGAACATGAAACTACACATACTGGCACTCATCTGTATACCTGCTGTTTTTGTCCTAAAACATTTCGATCACACGGTAACATGCACAAGCATAAAGTTAATAATCATTCACAAGAGTGGGTGCGGAGCCGTTCTCAACCAAATGATGTTACCAAAAGTTTACTCAATATATTACCACCAAGTGAAGAGCAAAACTAA
- Protein Sequence
- MICRLCLDESEKIFELFSEYGETEIAKTITKYFHIEVQPQDIISTIICAECWQHLYDFDKFWLSIDEKQKTLQTQLVFTQIKKDVEDDEVANETNTNLAIEPKSNELGEPEIDLVIEPPISFSEGLDFEAVEMKDDTSMDGDSFEGPMNAPANDSTCEENAIEFQTTKKRKYTKRVLNPAKTKTKKVLKKTLRSKRKTNKNDSEENIPQGNDSNSVKEKNTKKHDTQAIIRELDQFIAENTQLSCCICSQSLTDFNDLKKHFRQAHNCVGYVPCCGNRYRKRTLYVDHLKLHKDPDFFKCTLCNKQLASRNNYQNHMDTIHPNTESLLYPCKLCPRKFAKQYILDYHIRSRHTTTKNFVCTTCNKGFINSAVLKQHEKAVHLNTYDSVCEICGKCFKTAQNLVSHMEAIHNETPRPEEQCKICLKWLKNTRCLKKHMIVHRDQESGQEFKCPQCGMEKNTRHALSAHIRYHHSDKVFTCTMCGKEFKNPRALKEHETTHTGTHLYTCCFCPKTFRSHGNMHKHKVNNHSQEWVRSRSQPNDVTKSLLNILPPSEEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992995;
- 90% Identity
- iTF_00992995;
- 80% Identity
- -