Smar032686.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- Zfy2_1
- Assembly
- GCA_951509765.1
- Location
- OX608081.1:9958914-9962727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.26 39 6.5 0.1 2 23 154 176 153 176 0.92 2 12 8.7 1.3e+03 1.6 1.2 3 23 212 234 210 234 0.79 3 12 0.0022 0.34 12.9 0.3 1 23 274 297 274 297 0.95 4 12 0.00025 0.039 15.9 1.3 1 23 332 355 332 355 0.97 5 12 1.9 2.9e+02 3.7 1.1 2 23 394 414 393 414 0.78 6 12 0.042 6.5 8.9 0.1 1 23 424 447 424 447 0.95 7 12 0.00085 0.13 14.3 0.9 2 23 456 477 455 477 0.92 8 12 0.00086 0.13 14.2 1.6 1 23 483 505 483 505 0.96 9 12 2.3e-07 3.5e-05 25.5 1.0 2 23 511 532 510 532 0.97 10 12 2.6e-05 0.004 19.0 1.6 1 23 538 560 538 560 0.97 11 12 0.00015 0.024 16.6 4.2 1 23 565 587 565 587 0.95 12 12 0.082 13 8.0 4.3 1 23 592 615 592 615 0.97
Sequence Information
- Coding Sequence
- ATGAAATGCCGTAGTTGTATGCAAATTGATTGCGAAGTGGTTGAATTGCACTCTAATGTATCAGAGGACGGTAAAACCTTCTATGACTACTTCAATGAATGTACAAAGCTTAATGCAACAAAATCTGATGAACTTCCTAAAATATTATGCATAAATTGTGCAGAAAACCTGCAGGTTGCCTATAATTTTATAAGTGAAGCGATTAGATGTGACAAAgagttaaaaaaacttttatcaAGGCAAAAGATTGAATCTTCGTTGGAAATTTTAGAGGAAGTCGAATCGTATAAATCTGATCCTTTATCCTTCTATGATAGTACTGAGCAAAATGAAGATTTATTGGGTGTAAATGAAGGAGATGTGAAAACCGAGATCACggttgaaattttgaatatttctgAAGCAATAACCCAAACTTATGAAGATTCCGAAGAGGGCTCATTATGTTCAACAATCTTATACTGCGATATTTGTAGTTTGGAATATCCAACCGTGAATGATTTTCAGGCTCATTTTAACGAGTTACATAAAAATGACGTGACTTGTACAAAATGCTCAAAGCTGTTTGAATTACCAAGAGAACGATACCTACATGATAAACTTGTGCACAGTAAATTTGAATCTTCTATGCATTGTCCGTGGTGCCAATATTGCAGATACGTTTCAAGAAATGAGCTGATCGAACATGTGCAAGCAAATCACTATaaatcttatttgaaatattttgtgctAAGCAGCAGTCAAAATGATGACGATAATTTAAAGAAAGATTTTAGCTCCTATGATTATGATTTAGCCGAGGGCATCGAAATTGAGAAATTCGATTGTCCAATATGCTTCATTAGCTTTTCAGAACATGAAACTTATGAAGAACATATAAAAGAAGCACACAGTCACTCAACAACTGATGATATTCCGATGCCTCTGACTAAGAATGATAATTACAAACCTGACTTTCCACAGGCCGAAAACGATGAGAATCCGAAAGAGGCATTTGAATGTTTAGAATGCCCAaagcaatttcaattaaaaaaatcactTCTTAGACATATAAGACAAAAGCATGGTGGATTTAGTATAAACAATGTAACTGCAACGAATCGAAAAATCACTAAAAATAAGAATTCTATAACTGCCGTTTCGGAGGATCAAGAAGAACACTCAATCGAAGATCTGGTTGAATGTAAatattgcaataaaaaattagtcTCCACTAAAATTTCAAAGCACGAAAATCGACATGAATACAGATTAAAAAAGAAGGGAAAATATCTGTGCTCATTATGTCcACGTGAATTTGGATCTGAAATTAGCGTAAAAGTTCATGAGAGAAGAATACACTTACACCAAAGACCCGAGCCCAAAGAATGTCCTATATGCCATAAAAGGTTTgacacaaaatatttgaaagctcATATTGCAAATGTTCATCCCACCGAGCGTAAATTTGTTTGTGATATTTGCGGTTGTGCGTACAAAACGAAACTTTATTTAAGAGAACACAAGCTTTTGCATGTTGAACGAAAATTACCATGTactttatgcaataaaaaatttgtgcGCCCTACTGACCTGAAGAAACATATGCGTTCCCATACTGGGGAGAAACCGTATGCCTGTGAGGTGTGTGACAAACGGTTTGCGTTTAAAGGAGAGTACAATAATCATATGCAACATCATGCTGGGATCAAACATAAATGCAAAGATTGTGACAAGGAATTTAATGACAAGAAGCAATTGAGTATACATTCGTATAAACATAAAGGCATGCCATATAGATGCAGTATATGTGCTTATGGTTGCTCGAGACGTCATGTGTTCAAGCAGCATTTGCTGCGGGTACATGACATGACAATGACCCCCCACGAATACAGCGCCATGTTCCAAGCTAATACTGGCCGCACCGCAAATGTGCTATCTTTGGAAGAATTGCAGTCGCAGGAGGATTATTGA
- Protein Sequence
- MKCRSCMQIDCEVVELHSNVSEDGKTFYDYFNECTKLNATKSDELPKILCINCAENLQVAYNFISEAIRCDKELKKLLSRQKIESSLEILEEVESYKSDPLSFYDSTEQNEDLLGVNEGDVKTEITVEILNISEAITQTYEDSEEGSLCSTILYCDICSLEYPTVNDFQAHFNELHKNDVTCTKCSKLFELPRERYLHDKLVHSKFESSMHCPWCQYCRYVSRNELIEHVQANHYKSYLKYFVLSSSQNDDDNLKKDFSSYDYDLAEGIEIEKFDCPICFISFSEHETYEEHIKEAHSHSTTDDIPMPLTKNDNYKPDFPQAENDENPKEAFECLECPKQFQLKKSLLRHIRQKHGGFSINNVTATNRKITKNKNSITAVSEDQEEHSIEDLVECKYCNKKLVSTKISKHENRHEYRLKKKGKYLCSLCPREFGSEISVKVHERRIHLHQRPEPKECPICHKRFDTKYLKAHIANVHPTERKFVCDICGCAYKTKLYLREHKLLHVERKLPCTLCNKKFVRPTDLKKHMRSHTGEKPYACEVCDKRFAFKGEYNNHMQHHAGIKHKCKDCDKEFNDKKQLSIHSYKHKGMPYRCSICAYGCSRRHVFKQHLLRVHDMTMTPHEYSAMFQANTGRTANVLSLEELQSQEDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -