Basic Information

Insect: Sphenella marginata
Gene Symbol: -
Assembly: GCA_951509765.1
Location: OX608081.1:71705065-71707382[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00088 0.14 14.2 6.6 1 23 226 248 226 248 0.96

2 10 0.0024 0.36 12.9 6.8 1 23 270 292 270 292 0.98

3 10 0.0006 0.092 14.7 2.4 3 23 304 325 303 325 0.96

4 10 2.3e-05 0.0036 19.2 5.4 1 23 337 359 337 359 0.98

5 10 1.2e-07 1.8e-05 26.4 0.2 1 23 365 387 365 387 0.96

6 10 0.066 10 8.3 2.2 1 23 393 415 393 415 0.95

7 10 8.5e-06 0.0013 20.5 0.8 1 23 423 445 423 445 0.95

8 10 1e-05 0.0016 20.3 2.7 1 23 451 473 451 473 0.99

9 10 0.00065 0.1 14.6 3.9 1 23 479 501 479 501 0.99

10 10 0.0012 0.18 13.8 0.2 1 23 507 529 507 529 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00088	0.14	14.2	6.6	1	23	226	248	226	248	0.96
2	10	0.0024	0.36	12.9	6.8	1	23	270	292	270	292	0.98
3	10	0.0006	0.092	14.7	2.4	3	23	304	325	303	325	0.96
4	10	2.3e-05	0.0036	19.2	5.4	1	23	337	359	337	359	0.98
5	10	1.2e-07	1.8e-05	26.4	0.2	1	23	365	387	365	387	0.96
6	10	0.066	10	8.3	2.2	1	23	393	415	393	415	0.95
7	10	8.5e-06	0.0013	20.5	0.8	1	23	423	445	423	445	0.95
8	10	1e-05	0.0016	20.3	2.7	1	23	451	473	451	473	0.99
9	10	0.00065	0.1	14.6	3.9	1	23	479	501	479	501	0.99
10	10	0.0012	0.18	13.8	0.2	1	23	507	529	507	529	0.98

Sequence Information

Coding Sequence: ATGGATACAACTAGTGAAAAATATTTAGACTATCTATGTCGGACTTGTATGCATGAAGTAGCTGTAGTGTCATCTTCCCTTGAATCCAAAACTGAACCAGAGCGAAAGTGGCAATCCATCTTTGATACAATAAGTGAATATGGCGGTGTAATTATCGCTGAGCTTTTAACCAGTACAATTTCGCAAATAGAAGTGCAATGGAATGACGAGCtgccaaaaaatatttgttacgaCTGCTTACAGCAATTGCAGAGTAATTATCGGTTCCAGCAAATGTGCACACGGTCTGATCAGCAAATGCGTGAATTGGTTGCTCAacgaaatacaaaattaaaaatgccaATAACGGATAATGATTATGAAGTTAAATCAAATCTGATTTTAAAACAGGAAGCAGTTGTAGAAGCGAGTCGAGAAACGATTGAATTTGCGTGCGTTAACAATTCTCCTAATACAGCACAAGCACATGTTACTGACCCGCTCCAAAACATCGAAGCAGTAGTGGAACATTGTACAGAAGAATGTTCTAGCGACTTTGTTAAAACTGAACCATGTGTGGTTGAAACAAATATGGAATATAACGATGATGAACTACCGTTGTCAATGTATTTAGGAAAAAACGAAGTTTTGAAAGTAGCAACTGTGGCGGAACAAGTAAAGTCAGCCACTGCTCAACATAACTGCCATTTATGCAATGAATCTTTTGAAGAGCCGCGCCAtttgaaaaaacatttaaagcaacataaaaaaaataatcaacaaagcGATCAGCATGTGCAACCGAAGAAAAAATTCGAATCTTATCGATTTCATTGTGATATTTGTGACCGTCAATTTCATAAACCAGAATCCCTACATAAGCATCGCTTGACTCACGATGTGAACGTGGATGATCAGATAGCTAATATTTGTGATGTTTGTGACAAGACATGCAGCTCAAAGCGTGCATTATTGAGTCACAAAAAGATGTATCATTCTGCAGAAACGtcaaaaaaaccattaaaacaATATCCCTGTGAATTCTGTCATAAGAGTTACAATAGATGTGAATCGTTGAGGGTTCATTTGCGTACGCATACAGGAGAACGGCCGTATTTGTGCCCCGAATGTGGTAAAGCTTTCAGCCAAGCAGGCAACTTGAAACAGCATCGTTTACGTCATGGTGGCGATAAGTCTTTTGAGTGTCCCTACTGTCCAGCTAAATTTACTTGTCCCAATGATGTGTGTAAACATAAAGCAATACACGATCAATACAGGAACAAACGACACATCTGCGATGTTTGTGGTGCTAGTTTTAGCAAATCGGATGATTTAAGGCGACATAAAATGTTGCATAGTGGTGAAAAGCCATACAAATGTGACTATTGTGATATGCGGTTTATTCGGATGGAGTATCAACGCCGTCATATGCGCACCCATACCGGAGAAAAACCTTACAAATGCAAATACTGCGAACGAGCCTTTGCTCAAAGTAACGATCATATGAAACATTTGCGTAGACACCTAGGTGAGAACATTTACAGATGTGAGTTATGTCCCTTAGCGTTCCGTTTAGCTTCAGAGATGCGTTCACACTTTGCGACACATAAAAATGAAGACCCAGAGACACGTGAGCGAAATATGGAGGCGTTGAAGGAAGAAGAGGCTAAATTACTATTAAAATGTGCTGAGGCGAAGATCACAGAGTAG
Protein Sequence: MDTTSEKYLDYLCRTCMHEVAVVSSSLESKTEPERKWQSIFDTISEYGGVIIAELLTSTISQIEVQWNDELPKNICYDCLQQLQSNYRFQQMCTRSDQQMRELVAQRNTKLKMPITDNDYEVKSNLILKQEAVVEASRETIEFACVNNSPNTAQAHVTDPLQNIEAVVEHCTEECSSDFVKTEPCVVETNMEYNDDELPLSMYLGKNEVLKVATVAEQVKSATAQHNCHLCNESFEEPRHLKKHLKQHKKNNQQSDQHVQPKKKFESYRFHCDICDRQFHKPESLHKHRLTHDVNVDDQIANICDVCDKTCSSKRALLSHKKMYHSAETSKKPLKQYPCEFCHKSYNRCESLRVHLRTHTGERPYLCPECGKAFSQAGNLKQHRLRHGGDKSFECPYCPAKFTCPNDVCKHKAIHDQYRNKRHICDVCGASFSKSDDLRRHKMLHSGEKPYKCDYCDMRFIRMEYQRRHMRTHTGEKPYKCKYCERAFAQSNDHMKHLRRHLGENIYRCELCPLAFRLASEMRSHFATHKNEDPETRERNMEALKEEEAKLLLKCAEAKITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00992882;
90% Identity: -
80% Identity: -