Basic Information

Insect: Sphenella marginata
Gene Symbol: -
Assembly: GCA_951509765.1
Location: OX608081.1:71714247-71716751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.022 16.7 1.5 2 23 241 263 241 263 0.97

2 10 0.002 0.31 13.1 0.2 2 23 276 298 275 298 0.94

3 10 2.1e-05 0.0032 19.3 1.3 2 23 395 417 395 417 0.96

4 10 5.6e-07 8.7e-05 24.3 2.6 1 23 459 481 459 481 0.99

5 10 5.4e-09 8.3e-07 30.6 0.2 1 23 487 509 487 509 0.96

6 10 0.053 8.1 8.6 1.1 1 23 515 537 515 537 0.93

7 10 0.0029 0.45 12.6 2.0 1 23 543 565 543 565 0.96

8 10 3.7e-06 0.00056 21.7 1.7 1 23 571 593 571 593 0.99

9 10 3.6e-05 0.0055 18.6 1.5 1 23 599 621 599 621 0.99

10 10 0.00021 0.032 16.2 0.4 1 23 627 649 627 649 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.022	16.7	1.5	2	23	241	263	241	263	0.97
2	10	0.002	0.31	13.1	0.2	2	23	276	298	275	298	0.94
3	10	2.1e-05	0.0032	19.3	1.3	2	23	395	417	395	417	0.96
4	10	5.6e-07	8.7e-05	24.3	2.6	1	23	459	481	459	481	0.99
5	10	5.4e-09	8.3e-07	30.6	0.2	1	23	487	509	487	509	0.96
6	10	0.053	8.1	8.6	1.1	1	23	515	537	515	537	0.93
7	10	0.0029	0.45	12.6	2.0	1	23	543	565	543	565	0.96
8	10	3.7e-06	0.00056	21.7	1.7	1	23	571	593	571	593	0.99
9	10	3.6e-05	0.0055	18.6	1.5	1	23	599	621	599	621	0.99
10	10	0.00021	0.032	16.2	0.4	1	23	627	649	627	649	0.97

Sequence Information

Coding Sequence: ATGGCTACAGAAAGTGAACAATTTTTCGATTGCCTGTGCCGTACGTGTATGTACGAACTATCTGAATCGGCTTCATATGACGCTACAGCTCCACCTGATCAACAGTGGCAATCCATCTTTGACCCAATTGAGGAATTTGGTGCTCTCCAAATTTCTCAGCTGCTATCCAGCATAATACCTCAAATATTGGAAGCGCAGCTAAGCGACGAATTaccaaagaaaatttgtagtggGTGCTTACAGCAATTGCTAAGTGTATATAAGTTCCATCAGATGTGTACACAATCCGATCAACAGATGCGTGCACTGATTGCTAAAAGGAGTACAGATCCAATGGCAATCTTAGAGGCATCTGTGAAAGATGAAATAAACACACACATCGTTTTAAAACAAGAATCGATTTCGGAGGCAAATCAACCAACAATTGAGTTTGAGTCTGTGAGCACTTTACCAGAAATATCACAGGCACTTGCAATTGATCCACTACAAAATGTCGAAGTAGTGGAGTCTTGCACATATACGGAAAATGGTGCGGGAAAATATGTCAAAAATGAGCCATGCAATGATGAATCCAATGTTGaatatagtgatagtgaatcaCTTTCTCTAATGGCCTAcgtaaaaaacaaaatgatGAGTAGGGAAACAAAACTGGAACAAGTACGATTGGCCAGCCGTCCACACCACCATGAGAAAACTAGTAAAAGGCTGGCTCGAAATACTTGTGATATATGTAAAGGAACCTTCAGTACATCGGGCTCATTAAGTAGGCATAAAAGAAGATATCATTCTACTTCAAAACCAAAGAAAAAGCTTAAAAAGCTGCCTTGTTATTTGTGTGATGAAAAGTTTAACACGCGGCCAAAATTAGAGGAACATCAGCAATTAATGCATTCCAGTGAATCAATACCTACCACGGTATCTACGGAAGGCAAATCATGGATAGCGGAAAGAGAAGAGAAGGAACAGGAGGGACTAGCGCAAACACCACGTTTACATAAAGAGAAACTTGATGAAAAGGGGTTAGTGGAAACAGAGGAGGTCCTAGCTGGTGGACAAAAATCGCAAAGTTTTCACCAGgagaaaattgataaaaatgttataaCAAAAACAGAGTTGGAACATGATATAATAACTTGTGAACAAACACAAAGTATACACAATGTGAATTTACCAAGAAATGTTTGTAGCATATGTGAGAATAAATTCAGCACAAAGTCTTCATTATTGAGACATATAAAGAGATATCATTCTACCGAAAAGCCGAAGAGAGCTCTTAAAAAGTCATCTGATAATTTACACAATGAAACGTCTTCTACGCAGCCTAAAGTAGTAAAGTATAAGAAGAAATTACGTGAAAAAGCAATAAAACAATATTCATGTCATCTATGTGACAAAACTTATAAAAATTCTGAGGCGTTGAAGATCCATATACGTAAACATACAGGTGAACGCCCCTATTTGTGTCCCGAGTGTGGAAAATCATTCTCTGATCCTAGTAACCTGAAACAGCATATTTTACGACACGGCGGCGACAAGCTTTTCGAGTGTCCCTACTGTCCATTAAAGTTTCGCTGTCCGAACTATGTGGCTCAACATAAAATGATACATGAAGGTATCCGGCGCCATATATGTGATATTTGTGGTGCTGGTTTTACTAAAACATGTCAGTTAGCTGTGCATAAAAGATATCATAATAATGACAAGCCATTTAAATGTGAATATTGTGAAATGCGCTTTGTACGCAAGAGTGCTCAACGCGTTCATATGCGCACACACACCGGGGAAAAACCATACGAATGCAAGTACTGCGATCGTGCATTTGCTCAAAGTGGGGATCATATTAAGCATTTACGAACTCATCTAGGTGACAATGTATATAGATGTGAGCTCTGTCCGTTAACTTTTCGCTTAGCTTCAGAGTTGCGTTCACACTTTGTAACCCATAAACACGATGGTCAAGTTATGCCTGAGCTAAAAGACAAATCGCTATTAAAATTTGATGAATCGTCCAAGGTATCACAGGAACAAGTTGAGACAAATATCTCAAAATAG
Protein Sequence: MATESEQFFDCLCRTCMYELSESASYDATAPPDQQWQSIFDPIEEFGALQISQLLSSIIPQILEAQLSDELPKKICSGCLQQLLSVYKFHQMCTQSDQQMRALIAKRSTDPMAILEASVKDEINTHIVLKQESISEANQPTIEFESVSTLPEISQALAIDPLQNVEVVESCTYTENGAGKYVKNEPCNDESNVEYSDSESLSLMAYVKNKMMSRETKLEQVRLASRPHHHEKTSKRLARNTCDICKGTFSTSGSLSRHKRRYHSTSKPKKKLKKLPCYLCDEKFNTRPKLEEHQQLMHSSESIPTTVSTEGKSWIAEREEKEQEGLAQTPRLHKEKLDEKGLVETEEVLAGGQKSQSFHQEKIDKNVITKTELEHDIITCEQTQSIHNVNLPRNVCSICENKFSTKSSLLRHIKRYHSTEKPKRALKKSSDNLHNETSSTQPKVVKYKKKLREKAIKQYSCHLCDKTYKNSEALKIHIRKHTGERPYLCPECGKSFSDPSNLKQHILRHGGDKLFECPYCPLKFRCPNYVAQHKMIHEGIRRHICDICGAGFTKTCQLAVHKRYHNNDKPFKCEYCEMRFVRKSAQRVHMRTHTGEKPYECKYCDRAFAQSGDHIKHLRTHLGDNVYRCELCPLTFRLASELRSHFVTHKHDGQVMPELKDKSLLKFDESSKVSQEQVETNISK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00992850;
90% Identity: -
80% Identity: -