Smar007828.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- -
- Assembly
- GCA_951509765.1
- Location
- OX608078.1:74973156-74974807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-08 1.5e-05 26.1 0.1 4 44 20 60 17 61 0.92 2 2 8.3 1.3e+04 -2.5 0.1 13 22 138 148 136 150 0.71
Sequence Information
- Coding Sequence
- ATGCCCAATATTTACAAACGAAAGGCTAATTCTGCCAGAGCTTCGTGGTCTGATAAAAACTTAAGAGATGCTATTGatgcaatacaaaaaaaaattttttctatcaATGCGgctgcaaaaaaatatatggtCCCTTCTTCAACCATAAGACGGTACCTGAAATCTGGAACTTCCACCAAAAAAACATTAGGTGGACCTATTTGCTTGGGAGGCGAAATCGAGAAAAAAATGGTTTCACATATTAAAAAGATGCAATGCCATGGGTTCGCTCCAACACGGCAAATGGTTCGCGAAATGGCATATGACGTTGCTGAAAAGCTTGGTGTTCAGAGCCGCTTTAACAAGACAACCAAGACAGCCGGCGATGAATGGCTTCAACGGTTTTTGAAACGAAACCGTGACCTTTCGATTCGAAAATCTGAAGGTGTTTCGCAAGCTCGAGCGACCAGTATGAACCGTGAAGAAGTAAAAAAATACTTCGCACTTCTTGAAACTATTATGACTGAAAATGAACTTATGGGCAAACCACTTCAAATTTTTAACGTAGATGAAACCGGTTGCCAACTTAATAATAAACCAGAACTTGTTGTCGCCGAAAGAGGATCGAAAAATATCGCAGCTATCACTTCAGGAGAAAAAGGTGAGACAATAACGGTTATAGCTTGTTGTAATGCAGAGGGTACATTTTTGCCACCCACATGTGTGTTCAAAGGAAAGCGAATGAAACCAGAATGGAACGATAGAATGCCACCTGGTTCAAAAATATTCATGGGTGAAAAATCAGCGTACGTCACCAaagatattttctttttttggcttAAAGACCATTTCCTTCCAAGAAAACCAGAGGGAAAAGTACTTCTTATACTTGATGGGCATTCCTCTCATTGTACAAATGTTGAAATGCTGGATTTTGCAGCAGAATATGATATAATTCTATTTTGTTTGCCACCTCATACAACCCAATTCCTCCAGCCTTTGGATAGATCGTTTTTCAAAGCCTTCAAGTCATACTATTACGCTGCATCCTGGGGGAGTTCTGCTGTATCCAAAAATGCAATATCGGGTTTTGAGGCGACGGGCATTTGGCCTTTTAATCCATCCACAATACCAGATTATgcttttattgaaatgaacaaGGAAATTGAGATGGAAATTCCGCGGAATATGACACCACCACCGGACGTAAGTGATCCTTTAGTTAACACCCCTCAGCCTTCTGATATAACTCCTGGTAAAGCTCTAGACCAAGTCTGTCCAGTTCCCTCGGTATCTAAGCCTAAAAAGAAAAGCGAAAGAGCACAAAAAGCACGTGTGCTAACAACGCCGGAAAACAGGTCACAGCAAATGCTCACATCTCTCAGGCGCGGAAAAAAACCCAATAATAAACCAACTGAGCCTGTGTATAAGCCGAAGAATAAAAAGAAAGTCCTGGATTTGTCCAGCTCAACAGAGGAAGAGCAAAACGTTCCTTATGATGACGGGTCTGATGAATTACAATATAACCTCTAA
- Protein Sequence
- MPNIYKRKANSARASWSDKNLRDAIDAIQKKIFSINAAAKKYMVPSSTIRRYLKSGTSTKKTLGGPICLGGEIEKKMVSHIKKMQCHGFAPTRQMVREMAYDVAEKLGVQSRFNKTTKTAGDEWLQRFLKRNRDLSIRKSEGVSQARATSMNREEVKKYFALLETIMTENELMGKPLQIFNVDETGCQLNNKPELVVAERGSKNIAAITSGEKGETITVIACCNAEGTFLPPTCVFKGKRMKPEWNDRMPPGSKIFMGEKSAYVTKDIFFFWLKDHFLPRKPEGKVLLILDGHSSHCTNVEMLDFAAEYDIILFCLPPHTTQFLQPLDRSFFKAFKSYYYAASWGSSAVSKNAISGFEATGIWPFNPSTIPDYAFIEMNKEIEMEIPRNMTPPPDVSDPLVNTPQPSDITPGKALDQVCPVPSVSKPKKKSERAQKARVLTTPENRSQQMLTSLRRGKKPNNKPTEPVYKPKNKKKVLDLSSSTEEEQNVPYDDGSDELQYNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -