Smar024249.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- cbh2
- Assembly
- GCA_951509765.1
- Location
- OX608080.1:26293746-26296117[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.6e-11 8.4e-08 33.3 0.0 2 43 16 57 15 59 0.92 2 3 4.6 7e+03 -1.6 0.3 14 24 215 225 209 226 0.82 3 3 6.7 1e+04 -2.2 0.0 26 41 500 516 498 519 0.77
Sequence Information
- Coding Sequence
- ATGGTAcgcaattacaaaaaaaagactAATCGGTGTGCCATAAATGAAGATAATATTAGAAAGGCAATAAGGGATATCAGAAATGGGACCGAAACGCAAACTAGAGCTGCCATCAAATACGGAATAAATAGAACAACTCTAATCATGCGtttaaaaagtaaaacaccTTCTGGCAATCTTTCAGATTCTGGCAATGATAGCAGCGCTGATGATTCTTTCAAATTTCAATCGAAATTCACATCTCATCAAACATTTAATAAGCAACAAGAAACCGATATTTGTGATTACGTCAAGAAATGTGCTTTTTATTCTTACGGCTTAACTTatcaaactttaaaaaagtttgCATATGATTACGCTAAAGCTAACAATTTGGTTACTCCAACGGCCTGGGAAAAATCAAAAGAAGCTGGAGACGATTGGCTTTACGGATTTCTTAAAAGAAATGATTCTATATCTCTTCGAAAACCTGAAAAGATCAGTTTGGCAAGATTACGCGGTTTTACTAAATCAGCAGtggaaagttttttcaaaaaccttTCTACGGTGTTTGAAAAGTACTCATTTCAACCAAAAGATATCTATAATTTGGACGAAACTGGTTTAACTACCGTTTTGGAGCCTATTAAGATTTGTGCTGCAAAAGGACAACGTTCTGTTTGTCAAGCATCTTCCGCTGAGCGCGGCAGCTTGGTTACAATCGTTGGCATAGTTAACGCTTGCGGAAATCGTTTGCCTCCGGCTTATATATTTCCTCGTGTACGTTTTAGTGAAAGATTCGGAAGTGGATGCATGCCCGGTTCGTTGATGTTGAATACAAAATCCGGATGGATGATTTCCGAGCTCTTTGTAAATGTGCTGAAACACATTCAAAACTTTACGAACTGTTCAGTTGAAAACCCAATTCTAATTCTGCTTGATAACCATGCGTCACATTGCAGTTTGGAAAGCATTAACTATTGCGCAGAGGCTGGAATTGTATTACTTTCTTTTCCTCCACATACATCCCATCGTCTACAACCATTGGATGTGTCTGTTTTCGGACCCTTTAAGCAATTTTGCCGCAAGGCCTTTAACGATTTTCTAACCACGAACCCTGGAAAACAAATCAGTATATATGATATCGGCACCTTAACTCAACAACCATTTCAAAGAGCATTTTCCCCAGAAAACATAATGAACGGATTCAAAGCAGCAGGAATTTGTCCTCTCAATACCCAGGTTTTTCAAGATGAAACATTTGCGCTGGAGTCTGTAACAGATAAGGAAGTTGAACGCGTTCATCCTGAAAGATCAGATGATATGAATTCATCACAAAATGCTACAACAAATCCAGAAAGCAACCTAAATGATATATTACCATGTACTACGCCGGAATCAGTTAGGCCTATATCGCAATTGCATGCATCCACGAAATCTTCGAGAAGTGGAACTTCCCGAATCCTTACTTCTTCAACTGAAAAACGAAGGATTGAGCAGCTTactataaagaaaaattttacaatagcCAAGCGCACTCTCAAGTTTTCACAGAAGAGAACAAACCAGGCTAAAAAGAAGAAAGATGATATGAATTCATCACAAAATGATGCAACAAATCCAGGAAGCGACCAGAGTGATAAGTCACCATGTGCTACGCCGGAATCAGTTAGGCCTATATCGCAATTGCATGCATCCACGAAATCTTCGAGAAGTGGAACTTCTCGAATCCTTACTTCTTCAACTGAAAAACGAATGATTGAGCAGCTTactataaagaaaaaatttaaaaccgcCAAGCGCACTCTCAAGTTTTCACAGAAGAGAACAAAGCAGGCTAAAAAGAAGAAGCCAAAAAGAAAACCTCAACTGGTAATAGAATCTTCGGACGAAAGTACGGGTGGCATAAGCTACGCTGACACAATTGACTCTACTGGATTCCCTTCAGATGATGAAGGTTACCTTGAATGCCGGGCTGATGATTTAGAGACACACAAAATAACTGATGATGATTATTTGACTGTGGAAGACTACGTTCTGGTAAAATTCCAAGAAAACATCAAAAAGACCGTCTTCTATGTAGGTCAAATAATAGAAACGTTTGGCAACTGCACTTATAACATCACATTTTTCCGAAAGACATCTCCTTTAAGTTGGGCTTTTGTTAAACCAGAAATTGAAGATTTGGCTATAATTATGCGCAGTGAAATAGAGCTAAAGCTACCAATTCCTGAAAATCCTGCTTCAACTTCACGGTGTCgtacaaaatacatttttaaactgGACTTATCAAagtattatataaaataa
- Protein Sequence
- MVRNYKKKTNRCAINEDNIRKAIRDIRNGTETQTRAAIKYGINRTTLIMRLKSKTPSGNLSDSGNDSSADDSFKFQSKFTSHQTFNKQQETDICDYVKKCAFYSYGLTYQTLKKFAYDYAKANNLVTPTAWEKSKEAGDDWLYGFLKRNDSISLRKPEKISLARLRGFTKSAVESFFKNLSTVFEKYSFQPKDIYNLDETGLTTVLEPIKICAAKGQRSVCQASSAERGSLVTIVGIVNACGNRLPPAYIFPRVRFSERFGSGCMPGSLMLNTKSGWMISELFVNVLKHIQNFTNCSVENPILILLDNHASHCSLESINYCAEAGIVLLSFPPHTSHRLQPLDVSVFGPFKQFCRKAFNDFLTTNPGKQISIYDIGTLTQQPFQRAFSPENIMNGFKAAGICPLNTQVFQDETFALESVTDKEVERVHPERSDDMNSSQNATTNPESNLNDILPCTTPESVRPISQLHASTKSSRSGTSRILTSSTEKRRIEQLTIKKNFTIAKRTLKFSQKRTNQAKKKKDDMNSSQNDATNPGSDQSDKSPCATPESVRPISQLHASTKSSRSGTSRILTSSTEKRMIEQLTIKKKFKTAKRTLKFSQKRTKQAKKKKPKRKPQLVIESSDESTGGISYADTIDSTGFPSDDEGYLECRADDLETHKITDDDYLTVEDYVLVKFQENIKKTVFYVGQIIETFGNCTYNITFFRKTSPLSWAFVKPEIEDLAIIMRSEIELKLPIPENPASTSRCRTKYIFKLDLSKYYIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992520;
- 90% Identity
- -
- 80% Identity
- -