Smar046997.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- bab2
- Assembly
- GCA_951509765.1
- Location
- OX608083.1:47276884-47279743[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-11 4e-08 34.4 0.0 4 45 431 472 428 472 0.91
Sequence Information
- Coding Sequence
- ATGGGTGGCCCCCACCCGGGATTGCCGCCGGCCATAGAAGGTCAAACCTATTGTTTACGTTGGAATAATCACAAATCCAATCTGGTCGAGATTCTAGATGCGCTTATCAAAGTTGAAAGCTATGTCGACTGCACGATTGTTGTTGATGATCAAATTCAATTCAAAGCACACAGAGTTGTATTAGCCGCCAATTCGCCATATTTTCAAGCCATACTGCAAGATGTACCCATGGATCATTGCAGCATTATATTTCCGGGTGTCAAGGCATTTGAAATGCGTGCATTACTTGATTACATGTATACCGGTGAGGTGAATGTTACACAAAGTCAAATACCTACCATAATGCGAATTGCCGAGGAGTTGGAGGTAAAGGGTCTATTCGATATGGCCGATCTAAAAGAGAAATTCAACAAACTAAGTGAAGAGCATGCCGAACGTCATGGCTATCCGTATGGGGCTGCTAGCACAGCAGCGCTTACCGCTCCTTATGCCATGGCGGCCGGTTCATCCAGTGCGCCGGGCATGCTAGCCGCTGTACATAATGGCACAAAGGACCATGAGGCTGATTTAACAATACCACCGCAACATAATTCCTCATCCGTGATCTCAACCTCTTCGAACATATCGCCATCAGCTGCTGCAACAAGCACCTCATCACCACCTTACAGTAATTATAAGTCACAATATTCAAATTTGTACTCCAAATCTCCTGGTCCATCTAATTGTGGTGGAGCGACTAGCAATGTGAGTACAGGACAAACAAAATCTGCCAATACACCCCAAACACCCACACATTCGCAGCCGCAGCCTAATGCAGAGCGTGGCCAGTGGCCTCTGTCACCATCGGCAGCTGTTAGTATGTTGGGCTCTGTTTACGATTCGGTACCAGATAACCCACTCAAGCGTAAGAAGCTTTCTTCGATGACGTCAATGTTGATGAACCGTGACACTCCTATCTTACGCACAGTTTTGGCTCAAACGAATCCCGCTGATTCATCCCAGCCGATGCCCTTCTCATTGCCTGTGTCCAGCAAGGCAGACAAATCGAATACGGACAAAAGCTCACCTCATGCAGGACCAGTGGGGGGTCACAACAGTAATCATGGCCAGTCTTACAACGGCGCAGACTTCGGTGGTGataagAAATATCACGACGAGCCCCACTCGCCCTATACAGATCGCTCTTACGAGGATGATGGTTATGATGGTAAGGGCAATTATACGGGAGGTTTCAGTTCCAACGCGAATCAGAAGCCTGAATGGAAGCGTTATAAGCAATATACACGCAGTGACATTATGTCAGCTATACAGTGTGTGCGAGAAGGTATGAGCGCGCTTCAAGCATCGCGCAAATTTGGTGTTCCTTCACGTACACTATACGACAAAGTCAAGAAGCTTGGTATAACCACGGGACGACCAATGAATCGCACAATGAAACGTAGTCCAAGTAATATAGATTCTTCCGCTGCCTTTTCGTATCCACACGCTTACGGAGCCGAGCCTTTACTATCGTCGATGCACGAAGGACGCAACGATGAACGTGAGCCCAAAGATCACCATCGTGCTGAACATCATCACATTCCACCACAATTACCACATTCGTTATTAGATCACGCATTACTACAACAGGCATTGGAAAGCCGAGGTGGGGATATGGCAGGGCGTGGCGCACTTCTACTAGCAGCAGCGGCCCATGCAGCTGCTAATCGTATATCAACAAGCCCAGGCCCCAATGGATCAAACGCAATGCGTTCGCCAAGTCCCTCGAACTACGGTGGCCGCAAATACAGCCGCGTAAGTGAACAAGATTTTGCAATGGAGCGCGAACGTGAACTCGAGCGCATCAGAGAACACGATAACGGCGAGCGCGTTCATGAACATGAACGGCGACGTATGATGGGCGAAAATGATGTAGACACTGAACGCGAAATTGAGCGTGAGCGTGAGCATGAACGTGAACGCGAAATAGAACGTGAATACGAGCGAAAGCGATTACGCGAATTTGAGCGTGAGCATGAACGCGATTTAGAACGTGAACGTAATCGATCACATAAGCGCGAAAATCGACGACACTCACATGAAGATGAAGAAACGGTTGAGGATTTATCACTAACTCGCAGACGTTGTATGTCGCCTCAAATTGAATTTCCACCACCACAAAGAAATATGCGTTCACCATCATActcgccaccaccaccacagtCTGCAGCAGCAACAATTCCTTCAGCAATAGAATGCACGAACAATGGGGTTATAAAACTTGCGACCGCAGCAGCAATCTCTGttactgctacaacaacaacaaatccaaATGAGAATAGTCGATGTTCAAGTCGTAGCAGTAATGAATTAACAGTCGCTGATAACAACAGCATTGACGACTACAACAATGAATGTGTGCCGACAGCCTTAGAAGCATCAAAAGCTATGACAGCGATTAAACACGAAGTCATAAGCACTGATGATGGACGCGCCGACTGA
- Protein Sequence
- MGGPHPGLPPAIEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQIQFKAHRVVLAANSPYFQAILQDVPMDHCSIIFPGVKAFEMRALLDYMYTGEVNVTQSQIPTIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERHGYPYGAASTAALTAPYAMAAGSSSAPGMLAAVHNGTKDHEADLTIPPQHNSSSVISTSSNISPSAAATSTSSPPYSNYKSQYSNLYSKSPGPSNCGGATSNVSTGQTKSANTPQTPTHSQPQPNAERGQWPLSPSAAVSMLGSVYDSVPDNPLKRKKLSSMTSMLMNRDTPILRTVLAQTNPADSSQPMPFSLPVSSKADKSNTDKSSPHAGPVGGHNSNHGQSYNGADFGGDKKYHDEPHSPYTDRSYEDDGYDGKGNYTGGFSSNANQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSNIDSSAAFSYPHAYGAEPLLSSMHEGRNDEREPKDHHRAEHHHIPPQLPHSLLDHALLQQALESRGGDMAGRGALLLAAAAHAAANRISTSPGPNGSNAMRSPSPSNYGGRKYSRVSEQDFAMERERELERIREHDNGERVHEHERRRMMGENDVDTEREIEREREHEREREIEREYERKRLREFEREHERDLERERNRSHKRENRRHSHEDEETVEDLSLTRRRCMSPQIEFPPPQRNMRSPSYSPPPPQSAAATIPSAIECTNNGVIKLATAAAISVTATTTTNPNENSRCSSRSSNELTVADNNSIDDYNNECVPTALEASKAMTAIKHEVISTDDGRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01358106; iTF_00992749; iTF_00992481;
- 90% Identity
- iTF_01358106; iTF_00992749; iTF_00992481;
- 80% Identity
- iTF_01358106;