Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.11 1.6e+03 0.5 0.1 4 9 15 20 14 20 0.87

2 4 5.4e-09 7.7e-05 23.8 14.3 1 18 25 41 25 42 0.98

3 4 0.42 5.9e+03 -1.4 1.1 5 10 67 72 67 73 0.91

4 4 7.4e-07 0.01 17.0 13.7 1 19 78 97 78 97 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.11	1.6e+03	0.5	0.1	4	9	15	20	14	20	0.87
2	4	5.4e-09	7.7e-05	23.8	14.3	1	18	25	41	25	42	0.98
3	4	0.42	5.9e+03	-1.4	1.1	5	10	67	72	67	73	0.91
4	4	7.4e-07	0.01	17.0	13.7	1	19	78	97	78	97	0.94

Coding Sequence: ATGAAGGAAGTCAATCCGATCTGTCAGGATTGGATAGTGCCGCATTCGTGTGAGAAGCCTTTGCAGCCGGAGTGTGGACATCGATGTTTGCTGCTTTGTCATCCAGGTCCATGTCCACCCTGTGCTCAGACAATAACAACGAGCTGCAAGTGTGGCAATTCACCGCCTATATCCGTCCGTTGCTTCCAAAAGACCTGGACATGCAAGAGAAGATGCTCAGAAGTGCTTCCTTGTGGAAAGCACAAATGCGATCAAATTTGTCATTCCACTAAGCAATGTCCGCCTTGTAGCAAGTCTAGTTTGCAGAAGTGTGTTTGTGGCAGCGAGGAGGCAATGATTGCAAAAAGTCCTTCAAATCCTCCCCAAGACGAAGTCCTATTTCAACTGCGAATGCTCCAAGTAATAAACTACCAACAAATAAAAGCGACCGAAACAAATTCAGAAGCGGCTACAATCAAAGAAGAGCCACAAAATGATTCCGATAACAAAGCTGAAGATGACAAAGTCGGGCCGATTGAAGCGTGTGGGAAGAGTTTATGTACCAAACAGTCCAAATGA
Protein Sequence: MKEVNPICQDWIVPHSCEKPLQPECGHRCLLLCHPGPCPPCAQTITTSCKCGNSPPISVRCFQKTWTCKRRCSEVLPCGKHKCDQICHSTKQCPPCSKSSLQKCVCGSEEAMIAKSPSNPPQDEVLFQLRMLQVINYQQIKATETNSEAATIKEEPQNDSDNKAEDDKVGPIEACGKSLCTKQSK

Sequence clustering based on sequence similarity using MMseqs2