Stae030959.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000273.1:1014179-1024828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 36 6.3 3.1 3 21 113 131 112 132 0.94 2 11 0.00019 0.022 16.4 0.3 3 23 139 160 138 160 0.96 3 11 0.00018 0.02 16.5 1.9 2 23 192 213 191 213 0.98 4 11 0.037 4.3 9.2 0.9 2 20 215 233 215 234 0.94 5 11 0.0021 0.24 13.1 0.5 2 23 799 821 798 821 0.96 6 11 0.41 47 5.9 2.1 3 23 851 872 849 872 0.92 7 11 0.39 45 6.0 2.2 1 21 888 908 888 909 0.95 8 11 0.00089 0.1 14.3 3.5 3 23 919 939 917 939 0.96 9 11 0.00017 0.019 16.6 5.5 1 23 945 967 945 967 0.97 10 11 4e-05 0.0046 18.5 1.9 1 23 973 995 973 995 0.98 11 11 0.2 24 6.8 2.6 1 22 1001 1022 1001 1022 0.95
Sequence Information
- Coding Sequence
- ATGGAGGCGGTTGAAATAAAAACTGAACCGTTGGATGAAGATGGGGAATTCAATCAAATTACTGAAGACGAATTTATAATTAAATCTGAAAATGAAATGGACTACGCTCCCCCTAATGACATTCAATTAAGAGAACCTGAAGTACAATTAGAAGAAGGATCGGTAAGTGTCTATCTCTGTTTCATTTCATGGCCTCATTGTACCGTTAATTTCCCAATCAATGCACAGTTTGAACTTAAAGAAGAAACCACAAACGTCGACTCGCCGCCACCAGAACCAGTCACACCAACGCGATCTCATAAAAGTGAATTAAATTCCGAACCAATTTCGAATCATTGTAAATTTTGCAACATGTTCTACAAGAGCCGCACAACTCTTAAACTTCATGAGCGAAATTGCAACCAAAAGAACGACTGTCGATTGTGTGGCCAGAAATTTGTCACCGCCTACGCACTCACTACTCACATGGAGAAGATGCATAATCGACTGGCGGAAATGATGTCGCCACCGAAGGAGGCGAGGAAGTGTAAAATGGGTCGACCGCCGAATACGAGTCCTATCAAAGCTGTTAACCAATGTGAAATTTGTTCACTGAAATTTGCTAACTCGAGGAATTTGAATAATCACAAGAAGAAACACAACACTTGCCAGCAATGCGGTGAATATTTCAAAGTGTATGAGGACTTGAAGGACCATCTATGTCCAAATGCTCCAATTAAAGAGGAAGTTGAAGAACAAATCGAAGCTGAAGAGACTCCAACGAAGAAAATATTTAAAGCAACAAATAGCATGGTGGTGATACCAGGGCAGCAATTCCACAATCCAAGTGATTCTTATTCCAAAGCTGCCCAACCAAAATCACGCAAATGTCTTATTCCATCTCAAGACACTGATGATGAAGCATTGGACATTTCAAATGACAATTTAACTATGAATTCCAGTCTAAAGAGCGGGTTTTCTGTTGTAACGAAACACACTGATTTCGAAGCGTTCGCCCAACTGATGTTAAACGGAATCTCAAGGAATTCTGAAGGTATTCCAGGTCCGGAAAGTAAAAGCAAAGTACCAGCTGATGAAGCTCCGGAGAGTAAAGTTGTCGAACAGGAACTTATAACAAAGGAAGAGTTGGACTTAAAAGTCGATGTCCCACAACTGACTGAGGTGGATTCTCAAGCCAACTTCTTGCAATTCCTCAAACAAGATTTAATCACTCATTCGCCACTTATCAAAGAGGAGCCCATGGACGAGGATGAAGAACAGTCCGAATCAGATGAAGAAGGACAACCACCAAAACCTCTTATGCCTATTCCATTGCCTTTTATCAAAGACGAACCTCAAGATCATGAAGAACAATCCAATGGAACCGATGCCACAGACTTCCTTCTCGAAGAACTTTTCGACCGCAAACTCAAATCATTAGCAAAAGTACGAGGAGAAACCGCGAACGCATTGGGCTTCAAAGTAAAAAAAGATATTCCCCTGGAAAAAGCCCCTAGTAGCTTCGGAGTCCGCAAATCACCTCAAGTCAAAAAACGTACCTACACTCCGAGAAAAAAGTCTGATGAGCAAAAATTGGCAGGTTTCCAGTCGAAGTCCAGGAGAAAAGGCGGTCCGCATAAGGTCAGGGAAGATATTTCGGAGAACGTTACACCGCCACTAGAGAAAACAAACATTCCAAAACGATCAAGTGCCAAACAGCCACGCAAAAAACTCAAAATGTCGAATGAAGTGATTCCGAAGCTATTTGTCACGCTGAAGGACAAAAATACCATCATTCCAACACCTAAACTACCTCAATACGAAATCAAAAGTGATATTGTTGCGCCTGCTGGATTTGTCAACTTGGACACAATTCTAGCTCAATCGGCGGCGACCTTTGCTGCCAAACAACAAGCACAATCGGAAATAGAAAGCGATGAAAAACCAGCAGCAGAAGAATTTGTCGAAACTGAAATGAAGTCGTCATCAGAAGATGTTGAGCAAAATTCCGTCGTCATCCAACCCAATGACGAGAATAGTCAACCTCTAGTGACGTGTCCTGACATTGTTCTGGACGCTGATTTCGACTTTGAAGAAGCAATTCAATCGAATAAGCTGCCGAATGTTAAGCACGCCTACAATGTCATCAAATCTCTGACAGAAGAATACAAAAAAGCCGAAAAAGTCAAACATAAGGACCCGATTCTTCCGCCACCACTTCTTCCTCTAGCTCCTCCACTTCCGCTAGCAGCAGTCAATGTGCCTCTGGACAACGGGGAAGCGAACAAAAAACTCTCACCAGAAGTCATTGAAATGCACAATCGACCGTGTTCCTTGTTTTTCCCAATCCTAGACGATACTCAGATTTATAATATGGTTGCGAATGCCTTGGACGAAAGATATCGTTACCTTTGGGTTTGTCCCATATGCCCAAGGGAGTATACTCATGTGCGCCCGTTCAAGAGACACCTGTTGACTACCCACTTCAAAAGCGCCGATGAGCTTGAGGGCAAGGCATTTGAATTAAAGCCCGAAATAGTTTTTGAATCGTCGATTTCGGACGAAACATTCTGCCATTTGTGTCATGTGAACCTTGCCGACAATATATCGCTACGAAAACACCAAGACGAAATGCACAGCAAACCAGACTCCAATCCGACCAACAAGAAGAAGCCTCTGCTTCATAAATGCTATATTTGTAGTAAGCTGTGCTCGACACGGTCAATTCTGGCCGAACACATGAAATCGGATTGTGGCAAGAATCCACAATACGGCTGCAATGTGTGCGACAAGAAGTTCCATACGAAGAGTACGCTGAATTTGCATAAGACAATGCACACGGGCGAGTTGCCGCATTCGTGTAGTTTCTGTCAGAAGAGATTCCGTACAAGAGGACAGTTGAAGGTGCATAATAGGACGCATACGGGCGAGAAACCGTTTCCTTGCAAGGTTTGCAACCAACGCTTCACGCATCGCGAGACCCTGATTGCCCATCTCTCTCGCCACATCGACATGAAACGCTACAAATGTTACGGCTGTGATCAATTCTTCTCCTGCATATCTGGCCTCAAAACGCATCGTCAAACACGTCCAGACACCTGTGGCCAATACAAACTCAATGCACGAGCAATTGGTCCAAGAGTTCGTGTCATCAAAGGCAATGTCATATTCGAACCACAGCCAGTATACAATGCCAGATTGGCCAACACTGAGAAGTCCTTTCAAGCATCCTACATCCTGGACCATAATTACTATACTAAAGATCCCAATCACCTCAAAAAGGTGCCCAAACAAACTGTTAAAAGTGATCCTATTGTTGTTGAGCTTTAA
- Protein Sequence
- MEAVEIKTEPLDEDGEFNQITEDEFIIKSENEMDYAPPNDIQLREPEVQLEEGSVSVYLCFISWPHCTVNFPINAQFELKEETTNVDSPPPEPVTPTRSHKSELNSEPISNHCKFCNMFYKSRTTLKLHERNCNQKNDCRLCGQKFVTAYALTTHMEKMHNRLAEMMSPPKEARKCKMGRPPNTSPIKAVNQCEICSLKFANSRNLNNHKKKHNTCQQCGEYFKVYEDLKDHLCPNAPIKEEVEEQIEAEETPTKKIFKATNSMVVIPGQQFHNPSDSYSKAAQPKSRKCLIPSQDTDDEALDISNDNLTMNSSLKSGFSVVTKHTDFEAFAQLMLNGISRNSEGIPGPESKSKVPADEAPESKVVEQELITKEELDLKVDVPQLTEVDSQANFLQFLKQDLITHSPLIKEEPMDEDEEQSESDEEGQPPKPLMPIPLPFIKDEPQDHEEQSNGTDATDFLLEELFDRKLKSLAKVRGETANALGFKVKKDIPLEKAPSSFGVRKSPQVKKRTYTPRKKSDEQKLAGFQSKSRRKGGPHKVREDISENVTPPLEKTNIPKRSSAKQPRKKLKMSNEVIPKLFVTLKDKNTIIPTPKLPQYEIKSDIVAPAGFVNLDTILAQSAATFAAKQQAQSEIESDEKPAAEEFVETEMKSSSEDVEQNSVVIQPNDENSQPLVTCPDIVLDADFDFEEAIQSNKLPNVKHAYNVIKSLTEEYKKAEKVKHKDPILPPPLLPLAPPLPLAAVNVPLDNGEANKKLSPEVIEMHNRPCSLFFPILDDTQIYNMVANALDERYRYLWVCPICPREYTHVRPFKRHLLTTHFKSADELEGKAFELKPEIVFESSISDETFCHLCHVNLADNISLRKHQDEMHSKPDSNPTNKKKPLLHKCYICSKLCSTRSILAEHMKSDCGKNPQYGCNVCDKKFHTKSTLNLHKTMHTGELPHSCSFCQKRFRTRGQLKVHNRTHTGEKPFPCKVCNQRFTHRETLIAHLSRHIDMKRYKCYGCDQFFSCISGLKTHRQTRPDTCGQYKLNARAIGPRVRVIKGNVIFEPQPVYNARLANTEKSFQASYILDHNYYTKDPNHLKKVPKQTVKSDPIVVEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -