Stae023711.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000174.1:139625-142315[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1 1.2e+02 4.7 0.4 1 12 16 27 16 29 0.91 2 14 1.5 1.7e+02 4.1 1.2 1 22 322 343 322 346 0.88 3 14 0.036 4.2 9.2 1.2 1 23 351 374 351 374 0.93 4 14 5.8 6.7e+02 2.3 3.6 1 23 387 409 387 409 0.97 5 14 0.00021 0.024 16.3 4.2 1 23 416 438 416 438 0.98 6 14 2.2e-06 0.00025 22.5 0.3 1 23 444 466 444 466 0.98 7 14 0.00015 0.017 16.7 1.1 1 23 473 495 473 495 0.97 8 14 2.4e-05 0.0028 19.2 0.7 1 23 501 523 501 523 0.96 9 14 0.00012 0.014 17.0 0.3 1 23 529 551 529 551 0.98 10 14 5.4e-05 0.0062 18.1 0.5 1 23 557 580 557 580 0.95 11 14 0.00046 0.053 15.2 4.2 1 23 586 609 586 609 0.96 12 14 2.4e-05 0.0028 19.2 3.5 1 23 615 637 615 637 0.98 13 14 0.00055 0.063 14.9 0.4 1 23 643 665 643 665 0.96 14 14 0.00088 0.1 14.3 0.6 1 22 671 692 671 695 0.92
Sequence Information
- Coding Sequence
- ATGACAGAAATCATCGATCGAATAGCCCACTACACAACCGAATTCTTCAAATGTTACCTTTGTAATAAAATCTTTGCTGATGGTGACGAGCCATGGCATATGTTTGAAAAAAGACTCGCGGAAAATGGCCAAAGTGACTGTCCATTGGCAACGATTCTATCATCGGCCCTAGGCAAGGATTTGGACCAAAAAACTGCCCATTCCAAGTTAATTTGCGATGAGTGCAACGTTATCCTTCTGGAATATGAACGAATCGAAAAGAGATTTTACCAGTTTCGACTAAAGATTCTCACCGACTACAACAACACGGCTAAGGAGAACAACCTCGAGCCGATTTGGTTTGAGATCGGTGATATCGATGGCGCGGACATTCAGGGGATGATGGAATTGCCCCAACCAGAGAATCTCGTTGAAGATGAAAGTCTATTGACGGCTGGGATGAGTGTGAAGCTGGAGAATGATGAGATAATCACTCATATTCCGATTCTTGAAGGTCAAGAAATCGCTAATTTGGTTGTTGAGGAGAAAGAGGACGACGAGGAGACTGACGATGTTATAGGAATGGAACATTATGAAGAAGAGGGGGAAGCGAATATCGACTTGGCCGAGGAATTGGATGCGGTGCAGGTTTTGATTGATAATGCCCCCGGACAGGTGTTAGGTGATGGTGGCGGAGCAACGACAGCAACAGCGACAGTCGTAACCTACGAGGACAAGGGTCTACATGTGATTACCGAAGAAATTCCCTACGAGCAAATAATCGAGCAGACTTCCGTCATAAGTTATGAGAACAGTGTCGACGACGTCAACGAGCTGGCCATGGACTACAACAGCAGCAACGAAGAAAACGCTATAATCCAGGATGAGAGTCAAATCATCGTTTCGAAGCAGCGCTCTATAAAACGCCAGCAACAACCCACCGATCCCCAAGAGCTCCTCGAATTTGAATTCAACGGAAGCGTGTACTTCTGCCCGCTGTGTCCCGAACGCAGCGAACACGAGCCAATGTTCTTCGCCCATCACCTCAAAACCGCACATAGCTACAAATTCTACGTCTGTGACATCTGCTACAAGGGGTTCCATAAGCGCAACGAAGTGTCCGACCATATGGACGAGTTCCATGGCAACGGGAATGGCGGCGCTGGTGTATCTGGTGAGTTCCACtgcgagaattgcatgcgtgtctttttgaacctccgcgaattccgaatccacaagcgccagcactacacctcgaccaagcagcacgagtgctccgagtgccacaagaaatacagctccaagaaccttctcgacgagcacatgaatatgcacacgggcaagcggccgtacaaatgtgccgcctgtggcaaggatttcgcatcgaaatacacacttcaggcgcacatgaagatccacacgaagcggccgagaccgtacagctgtgatgagtgcgacaaatcgttcCTCAATCAACAAAATCTCGTCcagcacaaaaaactccatctggggctcaagaccttcatttgtgaggtctgccagaaggctttcagcacgcaacacaatctggacgtccacaaaatcgtccactccggcaataagcctttcatttgtcgaacctgcggcaagggcttcgcccggcgggcagagatacgggatcacgagcgaacgcacactggcgagcggccgtacaagtgtgacttgtgcgaactggcctttgcacagcgctcgaacctaatgacgcacaaaaaggccactcacctgaacgacaagaagcacaaatgcacaatgtgcgagcggtcattcaaaagaagacgcctgctggagtaccacaagcagtcggcgcacactggggagcgtccgcacaagtgcgaggtctgcagtgcgacgttcgtctatccggaacacttcaagaagcacatgcgaatccatagcggcgtcaagccgtacgcctgtgaagtgtgcggcaagctgttcaacagccgtgacaatcgcaacgcccatcgattcatccacagtgagaagaagccgtacgagtgtatggagtgcggcatgggttttatgcggaagccactgttgctggcgcacatgaagcacactaagcatgtgaaCGACACGATTATTGTCAATCAGCCGCAGATCAGTCACAAAGGAGTGCTAGAGGTGTATAAGGAGACCGACGAGGAGGGCGACGAGATGATATTGAGTGGTCAGCAGCAAGAGCAATTTCAGGCTAATCAAATTAAAAAGGAGCACGACGACGGAGGTGATGATGAGGAAGAGGATGAAGAAGAGGTCGACGAAGAGCGATATGATGAGATTGTGACGTCGGATGCGATTCTGGTCGAAGATGGTGACGGGCAGTATATCAAGAACGAGGATGGCGAGGTTAAGTACTTGCAATTCGCTGAGATGGACAAGGACGGACAGGCTACGTTCACTTGGGTCGATATTGGTGGAGGGAAAGAGGACGTGGAAATTGAATGA
- Protein Sequence
- MTEIIDRIAHYTTEFFKCYLCNKIFADGDEPWHMFEKRLAENGQSDCPLATILSSALGKDLDQKTAHSKLICDECNVILLEYERIEKRFYQFRLKILTDYNNTAKENNLEPIWFEIGDIDGADIQGMMELPQPENLVEDESLLTAGMSVKLENDEIITHIPILEGQEIANLVVEEKEDDEETDDVIGMEHYEEEGEANIDLAEELDAVQVLIDNAPGQVLGDGGGATTATATVVTYEDKGLHVITEEIPYEQIIEQTSVISYENSVDDVNELAMDYNSSNEENAIIQDESQIIVSKQRSIKRQQQPTDPQELLEFEFNGSVYFCPLCPERSEHEPMFFAHHLKTAHSYKFYVCDICYKGFHKRNEVSDHMDEFHGNGNGGAGVSGEFHCENCMRVFLNLREFRIHKRQHYTSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCAACGKDFASKYTLQAHMKIHTKRPRPYSCDECDKSFLNQQNLVQHKKLHLGLKTFICEVCQKAFSTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPYKCDLCELAFAQRSNLMTHKKATHLNDKKHKCTMCERSFKRRRLLEYHKQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECMECGMGFMRKPLLLAHMKHTKHVNDTIIVNQPQISHKGVLEVYKETDEEGDEMILSGQQQEQFQANQIKKEHDDGGDDEEEDEEEVDEERYDEIVTSDAILVEDGDGQYIKNEDGEVKYLQFAEMDKDGQATFTWVDIGGGKEDVEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -