Stae013228.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphaerophoria taeniata
Gene Symbol
-
Assembly
GCA_943591125.1
Location
CALSBT010000078.1:3694090-3701273[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.015 1.7 10.4 1.0 2 23 231 253 230 253 0.95
2 12 2.4e-05 0.0028 19.2 2.9 1 23 285 307 285 307 0.99
3 12 0.00018 0.021 16.5 4.4 1 23 316 338 316 338 0.98
4 12 1.3e-05 0.0015 20.1 0.1 2 23 348 370 347 370 0.96
5 12 0.045 5.2 8.9 1.3 6 23 751 768 751 768 0.99
6 12 0.00013 0.015 16.9 0.6 1 23 774 796 774 796 0.99
7 12 0.015 1.7 10.5 1.0 1 23 804 826 804 826 0.98
8 12 7.3e-05 0.0084 17.7 0.4 2 23 833 855 832 855 0.95
9 12 1.9e-06 0.00021 22.7 0.6 3 23 863 883 862 883 0.96
10 12 0.00048 0.055 15.1 0.2 2 23 892 914 891 914 0.95
11 12 0.00045 0.053 15.2 0.1 1 23 921 944 921 944 0.94
12 12 0.0006 0.069 14.8 0.2 1 17 950 966 950 967 0.94

Sequence Information

Coding Sequence
ATGTGGTGTATATTGTGTTTGTCTGTACAAGAAAATTGTATAGAAATATTCGAAGAGGAAGGCACCAGTCTGCATATCGATGAAATTATCAAGAAACATTTCTGGCTGCAGCCAAGTGTTGAAGACCGAAATGGGAGAGTCATTTGCACATCCTGCTGGCAAGAACTCAGTTCCTTTCATGAATTCTATGTACAAATTGAAAAAGTCCATTACGACCAATTGAATGCAATTCAAAACTCGGAGTACACATTCACCAACTTCACCAGCCCACAAGCACCTGAAACAATAGAATCTCAATACACAATAGAGTTTCTGGAGTCAGTTGAACGTTCCCCAGATGATATTAAACCTGACCTGAGAGAATTCGTTGACATTCCTGCGAATGAGAACAATTTCGCAGTTGCCGATGATCAAAGTGCTGCGTCGGAATTGCAATCAAGTGTGAAATGCGTCGATTTGGGAAAACAAGAACAAATCGCAGACTCTATCGGTGACAAATACAATGTTGAACAGATTGCCACCTCAGAGATACCAAAACCAACAGAATCACAACCCAAAGAAGTCAAAAAACGATACCAAGCACCAAGACCTCCACCACCTAGGAAATACCGAAGTTCAGGTTTGCAGCATTTAAACGCCCAACGCATGCGAGAATTTGACGATATTATTGCAAACAAACTAAAACGACTAACGTGTGCGATATGCAATAACAATTTCTGTGACTTTAGCGCCCTCGATAGACACTCCCGGGTCGAGCACAACGAAGGTGGTTACATGGTTTGTTGTAAGAAGAAATTAAACAAACGATACCTCATTGTCGATCACATTTTAATCCATGATAATCCGGACCATTTCAAGTGTGATGTATGTGGCCAAGTCTCGAAGGACAGAAAGTGTCTGCGAGTTCACATGCGCAAGCACGGTTCGGCAATAATAGAACGAAAATTCGAATGCACTGAGTGTCCGTTTAAAACTCACACCCGAACGAACTTAAAACGGCATATGCAAACGCATAGGCATATTACTGAGCGTAACTTTGTACCATGTCCACAGTGTGATCGATTCTTCGTATCGCTGGAAAATATGCAAAGGCATATCAATACTGTGCACGTCAAGTTGAAATGCAAATCTGGACTGAAGAGGCACATGGATGAGATGCATCCCACAGACGACAAGACAGAATTAGAGAGTAAAGAGTGTGGGAGAGAATTGCCAAGCGCATTGTACAATGGGGAATACAAAATCGTCGAAGCGAGATATACCCCCTTGCCACTATCCATGAGTGGCAATTGCATCAACGAGACCGAACATCTCGAGATTCTCGGTATGTGCATCACCGACCACATCTTGTGGAACGAGCACATATGCGATGTCGCCAAAAATGCCGCAAGATGTTTAGAAGAGGAAAATGTTATAGAAATATTCGAAGAAGAAGGCCAAAGCCTTTGCATCGATGAAATTGTCATCAAACATTTTTGGCTCCAGCCAAACAAAAGTAATCCAAATGAAAGGGTAATATGTTTGTCCTGTTGGAAGGCACTCAGTTCGTTCCATGAATTCTATGTACAAATTGAGGAAGCCCATCGCATCCATTCCAAGGCATTCGAGAAGGATGGGGATCTTAAATTGGAAAGTGCAGAAAGTGCTGTCGCCATAAACAAAGTCGAAAAAATTACATCGGATTATCTGGATTCAGATATCAAACTCGAAGTTAGAGAAGACGTTGAGATTTCTCAGGATGTTGAGAATATTCAAGGGAATCGAAAATCGTCAATTGACCTCGAATCTCCACCAGCCAACTCTACAAGGAGTCGGAAATGTGCAGACATACGAAAACAAGATTCCCAAGATGATGGTGATTCAGTGAAGAGCGAGGACGAAAAACCATTCGATGCTGACCAGGAATGGCAAAACGAAGAAGATGGCTATTCAGACAGTACTGGAGAAGACAGTGACTACGTCGCCCAACTAACCACCGACAAAGTAAAACAACCAATGAAATCACCCCCTGCTGATAAGACAAAACGCGGCCGCAAAAGAAAAGCCCAATCAAAATCTTCTGAATCTAAAAAATATCGAAGTTCAGGTGTGCAACATTTGAATGCAACTCGCATGCGAGAATTTGACGAAATCATCGCCAAGCACATGAAACTCTCATGTGCTATCTGCCAAGATATTTTGTATCCTGACTTTGGGGCTCTGCATAGACACTTTCGGTCGGAACACAACGAGTGCGGCTATGTGGTTTGTTGCACGAAGAAATTCCGTAAACGTGGTCTGCTGGTGGACCACATTTGCACCCATCAAAATCCGGAATATTTCAAATGTGAACGCTGCAGCAAGGTTTTAGTTAACCGAAAAGGACTCGAAAGTCACATGTTAACCCACGATACGGAAAAACAACGCATATTCCAATGCGATCAGTGTCCGTTCAGCTCTTTCACTAGGCCAATATTAACGCGACACATGCAAACGCATATTTCTGAGCGCAACATCAAATGCCCTCAATGTGATAAATTCTTTTCAACACAAGATATCCTGCGAACGCATATCAATAATGTGCACAATGCTTCGTATACGAGAATATGCGATCAGTGCGGAAAGACATTTCGTCGTCCGGATGCATTCAAACGCCATCAATTGGAGCACGATGGTATAACTCAACCGTTGATCCCTTGTGAAGAGTGCAACGTCAAGTTGACCAGCAAATATGGACTGAAAAGACACATGGAATCAATGCATCCCAAGGAGGACATGAAACACATTTGTAGTGAGTGTGGAAAAGTTGCACCAAGTGCTGCTGCATTGCAACGTCATATTTCGTATATGCACAAAATGGAACGCAAGCATGAGTGCCCCATGTGTGGCAAAGCATTTAAGAAGAGAAGCACGCTGAAGCTCGAATCTGAGCCAAGGTAG
Protein Sequence
MWCILCLSVQENCIEIFEEEGTSLHIDEIIKKHFWLQPSVEDRNGRVICTSCWQELSSFHEFYVQIEKVHYDQLNAIQNSEYTFTNFTSPQAPETIESQYTIEFLESVERSPDDIKPDLREFVDIPANENNFAVADDQSAASELQSSVKCVDLGKQEQIADSIGDKYNVEQIATSEIPKPTESQPKEVKKRYQAPRPPPPRKYRSSGLQHLNAQRMREFDDIIANKLKRLTCAICNNNFCDFSALDRHSRVEHNEGGYMVCCKKKLNKRYLIVDHILIHDNPDHFKCDVCGQVSKDRKCLRVHMRKHGSAIIERKFECTECPFKTHTRTNLKRHMQTHRHITERNFVPCPQCDRFFVSLENMQRHINTVHVKLKCKSGLKRHMDEMHPTDDKTELESKECGRELPSALYNGEYKIVEARYTPLPLSMSGNCINETEHLEILGMCITDHILWNEHICDVAKNAARCLEEENVIEIFEEEGQSLCIDEIVIKHFWLQPNKSNPNERVICLSCWKALSSFHEFYVQIEEAHRIHSKAFEKDGDLKLESAESAVAINKVEKITSDYLDSDIKLEVREDVEISQDVENIQGNRKSSIDLESPPANSTRSRKCADIRKQDSQDDGDSVKSEDEKPFDADQEWQNEEDGYSDSTGEDSDYVAQLTTDKVKQPMKSPPADKTKRGRKRKAQSKSSESKKYRSSGVQHLNATRMREFDEIIAKHMKLSCAICQDILYPDFGALHRHFRSEHNECGYVVCCTKKFRKRGLLVDHICTHQNPEYFKCERCSKVLVNRKGLESHMLTHDTEKQRIFQCDQCPFSSFTRPILTRHMQTHISERNIKCPQCDKFFSTQDILRTHINNVHNASYTRICDQCGKTFRRPDAFKRHQLEHDGITQPLIPCEECNVKLTSKYGLKRHMESMHPKEDMKHICSECGKVAPSAAALQRHISYMHKMERKHECPMCGKAFKKRSTLKLESEPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-