Stae037311.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000778.1:100688-118325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.044 5.1 9.0 0.7 2 23 210 232 209 232 0.96 2 26 4 4.6e+02 2.8 0.2 6 23 241 258 241 258 0.98 3 26 4.5e-05 0.0052 18.4 1.7 1 23 264 287 264 287 0.97 4 26 0.0055 0.64 11.8 2.0 1 23 295 317 295 317 0.94 5 26 2.9e-05 0.0034 18.9 0.1 1 23 325 348 325 348 0.96 6 26 3.8 4.4e+02 2.9 0.1 3 23 356 376 355 376 0.93 7 26 1.1 1.3e+02 4.5 0.1 2 23 649 671 648 671 0.92 8 26 4.8 5.6e+02 2.5 0.3 6 23 680 697 680 697 0.98 9 26 0.021 2.4 10.0 2.9 1 23 703 726 703 726 0.95 10 26 0.0085 0.98 11.2 0.1 1 23 734 756 734 756 0.95 11 26 0.0041 0.47 12.2 1.2 1 23 764 787 764 787 0.96 12 26 0.00067 0.077 14.7 1.2 3 23 795 815 794 815 0.96 13 26 0.008 0.93 11.3 0.5 2 23 824 846 823 846 0.95 14 26 0.00018 0.021 16.4 2.8 1 23 851 874 851 874 0.95 15 26 0.00016 0.019 16.6 1.6 1 23 880 902 880 902 0.98 16 26 0.00016 0.019 16.6 4.6 1 23 908 931 908 931 0.98 17 26 1.1 1.3e+02 4.6 0.0 2 23 1075 1097 1074 1097 0.92 18 26 2.1 2.4e+02 3.7 0.7 6 23 1106 1123 1097 1123 0.87 19 26 0.00013 0.015 16.9 2.0 1 23 1129 1152 1129 1152 0.96 20 26 0.0015 0.17 13.5 2.4 1 23 1160 1182 1160 1182 0.96 21 26 9.7e-06 0.0011 20.5 0.7 1 23 1190 1213 1190 1213 0.98 22 26 0.043 5 9.0 2.9 3 23 1220 1240 1219 1240 0.95 23 26 0.013 1.5 10.6 0.4 2 23 1249 1271 1248 1271 0.95 24 26 0.0037 0.43 12.3 2.9 1 23 1276 1299 1276 1299 0.95 25 26 0.0027 0.31 12.8 0.6 2 23 1306 1327 1305 1327 0.97 26 26 0.0003 0.035 15.7 1.2 1 23 1333 1356 1333 1356 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTCGTTTATGTTTGACCGACGCACCTCAGAGCATTTCCATTTTTAGCCAGGATAAAATTCCGAAATGCATAACAAAGTATTTGCATTTGAAGCTTTCCCCGGAAGATCCTGTATCAAAAGTTATATGCTACAACTGCTGGAACCAGTTAGATAATTTTGATATATTCTGCTTCCAAATAGCCGAGGCGCAAACTTCACTGCTAAACACCACAAAAAACAATGAAGTTCATAATCAAGTGAAGGAGGAGGATCCGGCAATAGTGTCGAGCGGAGATGCTGATGAAAATGCTGAAAACACTTTGATTTTAAATGAAGAAATTATCAAGACTGAATTGGACACCGAACAGACAAGTACACCTCTGGATACTAATTGTAAAAAAACAAATAAATCAACGTTTCTGTCTCAGAGAGTTACCCGAAAGTCAACTTTGAGCAAGAAAAAGATAACTAATGAAGCAGTTGAAGTTGAAAAATCAGAAAACGTTGAACACAAACAAGAAGAATCAAGGCTAATGGATAAATCTTGTTTAAAAAACAAACCAGATAAGTCTGCAAAGTTCTTGACGGCCTTGCAGACTTCAAAAGAATTCGATGAAATAATTCGAAACCATATGAAATTATCATGTGACATCTGTTCCGTGCACCTTTCCGACTTTGCCGAGTTGAAGCAACATTTTCGAACGGTACACAAACGTCGAGGATATGCGGTCTGTTGCAATAAGAGACTCAATAAGCGCGGGTTGTTCGTAGATCATATCAACGTCCACAAAAACCCTGAGTACTTTAAATGTAATGAATGTGGAAAAGTCTTGTCCGACAGAATTTGTCTCAATAAACACATTTTATCATTTCACCAAACTGAAGAGCTCAAAAATTTCAAGTGTGATTTTTGTCCCAAAAAGTTTGCCAAACGTTATCTGCTGGATCAGCACAGTGTCAAGCATGTTCCACAAGATGAATTCACTTTCATTTGTGGTGAATGTGGCAAGGGATTCCCAACGAATCCAACACTTAAGGCCCATTTGAAACAAGTCCATACAACACTTTACGACAGGATGTGTGAAATTTGTGCCAAACTTATTCGCGGTAAAGCAGCTTTCAAACGGCATGTGGAAGAGCATAAAGAAACCAAATCATTTGAAGGAACATATGGCAACACATACTGGAGAAACACTTTACACATGTCCCCATTGTCCATCGACATTCAATTCAAGGTGCAATATCTAACACCGGAAGATCCAGTTTCGAATGTTATATGTACAAAATGTTGGGAGCAATTAGATGGATTCGAAAAGTTTTGCCTCCAAATCGAGGAAGCCCAAAAAACACTCAAAACATTGGAAGAGGGTTTAGTTAAGGAAGAAGCAAATTCAATATTTGTTAAAGATCTTAGCCCTCTGAAGCAAGAAGAGCAAGCGGAGGAATCTATTGGTAAGTTTAAAGTATTGTTCTATAGTTGGTTAGATGAGATACCAGCATCTCTAAGTTATGAAAAATTTACTTTGGGTCTAAACAAAGAAAACCAAATTCTAGACAATGGTAAATTCAACGACGATATATTGGATTGCCTGGATGCAAGCCTACTAAAAGTCGAGTTGCAGGTTGATGATCCAAATACTATTCCACAGTCGACAAATTCAAATTCTTCGGAATTTACTCCCACTCGAGGCTTTAGAGAAAAACGAAAAACAGTGACTTCTGATACAAGTGACAATGATGATGTCGACAATGACAAAGAAGAGGGTGATGAAACAGACGAATTCGAAGCTTCAGACACAGATGAAGACGAAGAAGACGAAAAGCCTAAAAAGAGAAGAACTGCATCAAAGGCAAAACGGAAATACAACACTTCAAAGTCACCCAAGCCGAAAAAGCTCTCTAGAGCAATGCTTGTGGCCAGGGAACATGATGAGATCATCAAGAAGTACATGAAACTAACGTGCGATATATGCTCAATTGATCTTGTCGACTTCAATGATTTGCAAAATCATTTCAAAGCGATTCACAACCGAATAGGCTATGCAGTTTGCTGCAACAAGAAGCTCAAAAATCGTGGCTTAACTGTCGATCACATCAATACCCACAATAATCCCGATCATTTCAAATGCCGAGAGTGCGGGAAGATTATGTCGGATAGATTTTGCATGCAAAGACACATGCTCGCGTTTCATCCAACCGATGAAGTAAAAAAATTCCCATGTCCTGAATGTCCTAACAAATTCGCTTCTCAATATCTATTGGACCTGCATAGTGCCAGGCATGTGCCAGAGGATAAATGCGCTCACGTTTGTAAAGATTGTGGACAGAGATTTCCAACAATTTCAATATTGAATAGCCACGTTAAACGAAAACATTCTACAGCATATGATAGAATGTGTGAAATTTGTGCCAAACTCTTTCGACATAAGTCGGCTTTTGAGCGGCATATGGAAGAGCACAATGGCATTGTTCATCCGCAAGTTCAATGCGAGGAATGTGGTTCATGGCTTAAAGATAAATCCAGTCTGCAAAAGCATATGAACAATAAACATGATCATCAGGAACACATTTGCAATATCTGTGGACGACACTCAACGTCCAAGAGTGCCCTTCAAAGTCACATTAAATACATGCACGAAACTACACCTTGTTTCAAATGTACATTCTGTGAGAAATCATTTAAAAAGGCTATCAAGTTGAAGGAGCATGTGGCAACTCATACCGGCGAAGTTCTCTACACGTGTCCGCATTGTCCGACAAAGTTTAATGCGAAATCCAATTTGCATTCTCACCGCAAAAAGGCACATCGCGAGGAATGGGAGAGAAACAGGCGTTGTTCTAAGAAGGAACCAAAATTAGAAGTTATTGATGGTTACAACAATCTCGATTTATTGGACTGCCTGGATGCAAGTCTTCTGAAAGTCGAAATGCCGGTTGATGATCAAGGAGATATTCCACAATCGCTTCCTTCAAATACCTCAGACTCAATTCCTCTTCGAAGAAGCAGAAACACAACAACGTTGGCCCTTGAAACGAAACAAGAAGATAAGAATGATAACGACGATGTTGATGAGAATGACAAAGAAGAAGATGACGATACAGAGGAATATGTAGCTTCAGACACAGATGAATACGAAGAAGAACAAAAACCTAAACGCAAAAGAAAATATCCACCCTCTAAAACTAAGCTCATGAACAAGGAACATGATGAGATCATCAAGAACTTTATGAAACTCACGTGCGAAATATGCTTTATCGATCTTGTTGACTTCGATAGTTTGCAAGCGCATTTCAAAGCGGTACACAAATGCAATGGTTATGCAGTTTGTTGCAACAAGAAACTCAAAAACCGCGCCTTAATTGTCGATCACATCAACACCCACAAGAACCCCGATTATTTCAAATGCCAAGAGTGTGGAAAGGTCATGTCAGATAAATCTTGCATGCAAAGACACATGCTCAATGTCCATCCAACCGACGATGAAAAAAAATACCAATGCCCTGATTGTCCTTGCAAATTCACCTCTCGTTATAAATTGGACTATCATACGGTCATACATTTGACAGAGGATAAATGCCCGTACGTTTGCAAAGAATGTGGAGAGAGATTCCCAAAAATTTCAATGCTAAATACTCACATGAAACGAAAACATTCAACATATTATAGAATGTGTGAGTTTTGTGCCAAACTCTTTCGACACAAGACGACTTTTGAGCGGCATATGGTGTTGCATAGTGACATTGTTCGTCCACAAGTTCAATGTGAGGAATGTGGATCATGGCTTAAAGATAGGTCCAGTCTGCAAAAGCACATGAACAATAAGCATGATCACCAGGAGCACATTTGCAATGTTTGTGGTCACCACTCGCCGTCGAAGAGTGCTCTGCAAAGTCACATTAAATACGTGCACGAGACAGAAGCTTCTCTGAAATGTACATTTTGTGAGAAATTATTTAAAAGTCCTATCAAACTCAAGGAGCATGTGGCAACTCATACGGGCGAAATGCTCTACACGTGTCCCTATTGTCCGGCAATGTTTAACGCAACATCCAATTTACACTCACATCGCAAAAGGGCACATCGCGAAGAATGGGAGAAAAATAGACGCTGTTCAAAAAAAGAGCCAGCAAAAAAAGTTATGTAA
- Protein Sequence
- MICRLCLTDAPQSISIFSQDKIPKCITKYLHLKLSPEDPVSKVICYNCWNQLDNFDIFCFQIAEAQTSLLNTTKNNEVHNQVKEEDPAIVSSGDADENAENTLILNEEIIKTELDTEQTSTPLDTNCKKTNKSTFLSQRVTRKSTLSKKKITNEAVEVEKSENVEHKQEESRLMDKSCLKNKPDKSAKFLTALQTSKEFDEIIRNHMKLSCDICSVHLSDFAELKQHFRTVHKRRGYAVCCNKRLNKRGLFVDHINVHKNPEYFKCNECGKVLSDRICLNKHILSFHQTEELKNFKCDFCPKKFAKRYLLDQHSVKHVPQDEFTFICGECGKGFPTNPTLKAHLKQVHTTLYDRMCEICAKLIRGKAAFKRHVEEHKETKSFEGTYGNTYWRNTLHMSPLSIDIQFKVQYLTPEDPVSNVICTKCWEQLDGFEKFCLQIEEAQKTLKTLEEGLVKEEANSIFVKDLSPLKQEEQAEESIGKFKVLFYSWLDEIPASLSYEKFTLGLNKENQILDNGKFNDDILDCLDASLLKVELQVDDPNTIPQSTNSNSSEFTPTRGFREKRKTVTSDTSDNDDVDNDKEEGDETDEFEASDTDEDEEDEKPKKRRTASKAKRKYNTSKSPKPKKLSRAMLVAREHDEIIKKYMKLTCDICSIDLVDFNDLQNHFKAIHNRIGYAVCCNKKLKNRGLTVDHINTHNNPDHFKCRECGKIMSDRFCMQRHMLAFHPTDEVKKFPCPECPNKFASQYLLDLHSARHVPEDKCAHVCKDCGQRFPTISILNSHVKRKHSTAYDRMCEICAKLFRHKSAFERHMEEHNGIVHPQVQCEECGSWLKDKSSLQKHMNNKHDHQEHICNICGRHSTSKSALQSHIKYMHETTPCFKCTFCEKSFKKAIKLKEHVATHTGEVLYTCPHCPTKFNAKSNLHSHRKKAHREEWERNRRCSKKEPKLEVIDGYNNLDLLDCLDASLLKVEMPVDDQGDIPQSLPSNTSDSIPLRRSRNTTTLALETKQEDKNDNDDVDENDKEEDDDTEEYVASDTDEYEEEQKPKRKRKYPPSKTKLMNKEHDEIIKNFMKLTCEICFIDLVDFDSLQAHFKAVHKCNGYAVCCNKKLKNRALIVDHINTHKNPDYFKCQECGKVMSDKSCMQRHMLNVHPTDDEKKYQCPDCPCKFTSRYKLDYHTVIHLTEDKCPYVCKECGERFPKISMLNTHMKRKHSTYYRMCEFCAKLFRHKTTFERHMVLHSDIVRPQVQCEECGSWLKDRSSLQKHMNNKHDHQEHICNVCGHHSPSKSALQSHIKYVHETEASLKCTFCEKLFKSPIKLKEHVATHTGEMLYTCPYCPAMFNATSNLHSHRKRAHREEWEKNRRCSKKEPAKKVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -