Stae028595.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000231.1:1779762-1780364[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-08 5.2e-05 24.1 0.0 9 37 20 48 15 53 0.87
Sequence Information
- Coding Sequence
- ATGCCAAAGAAAGGAGTTCCTGTGCGCAAATATGATCCATGTAAAATGAGACAAGTTTTGACTGCAATCCAAAGAGAAGAAATGGGCGTGTTGTTGGCCTCCAAGAAATTTGATGTCCCAAAATCAACATTGCAACGCATGGCACAAAGTGGTAAGAGCATTGATGAGCTTTTGTCTACACCCTTGGGGCGAAAACCTGTGTTTAGTAAAGAAATGGAAGAAGAGCTTGTCGAATATTTACATGACATGGAAAATCGCTTTTGGGAGCTTACTCGAAGTGATTTACGGAACCTTGCATTCCAAGTTGCAGAAAAAAACAAAATTCCTAATAAATTTTCGTTGCTTCATAAAACTGCGGGAAAAGATTGGCTCTACGGGTTTCTAAAACGCCATAAGAATGAAATCAGCATGCGACATCCCACAGGAACCTCAATTGACAGAGCTAAGGGCTTTGTACCAGAAAATGTTGATAAATTTTTCAATATTTTTGAAAATTTATATAACTTCTCAGCATCCAGAATATGGAACGTTGATGAGACAAGCTTAAGCATTGTTCAGTCCAAGCAGCCTTATGTGTTGGCAAAGCCTAGACAATCAGAATGA
- Protein Sequence
- MPKKGVPVRKYDPCKMRQVLTAIQREEMGVLLASKKFDVPKSTLQRMAQSGKSIDELLSTPLGRKPVFSKEMEEELVEYLHDMENRFWELTRSDLRNLAFQVAEKNKIPNKFSLLHKTAGKDWLYGFLKRHKNEISMRHPTGTSIDRAKGFVPENVDKFFNIFENLYNFSASRIWNVDETSLSIVQSKQPYVLAKPRQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356804; iTF_01356805; iTF_01356789;
- 90% Identity
- iTF_01356804; iTF_01356805;
- 80% Identity
- -