Stae025751.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000198.1:145195-145830[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 2.1e-05 25.3 0.0 2 42 16 56 15 58 0.93
Sequence Information
- Coding Sequence
- ATGCCAGGGAACTACAAACGGAAATCAACTAGGCTTTCTTGGTCAAAAGACGACATGGATAAGGCTATTGAAGATATTAAAAACAAAAAGTGTGGTTGGCTTTCTGCCGCTAAAAAGTACAAAGTGCCGCAAGCCACCCTCCGGCGCCACTTCAAAGCCATTCCACAAAACATGGGGCGCTTCAAACCAACGTTCAACCAAGAAATGGAAAAGCAGATGGTTCAACACATATTGGACTTTGAGAGCCGTTTCTTCGGTTTTACCACTACAGAAGTCAGAAAATTGGCTTATGAATTTGCATTCAACCCGTTGACACTTAGATCACCTGAGCCGACTTCCGCTGCGAGGGCCAAAGCATTTACTAAGCCACAGGTATTGAAGTTTTTCGAAATTCTAACTCCGTTGGTCGCAGAAATACCGCCTCATAACATTTATAATATGGATGAATCTAGATTGAGCACAGTTCAAAGGCCACCAAAAGTCTTTGCACTTAAAGGTAAAAAACAAGTTGGTGCCATAACAAGTGCTGAAAGAGGTCAACATATAACTGTAGTGGTCTGTGCAAGTGCAACTGGAAACTTTGTTCCTCCAGCTTTGATATTCCCCAGAAAAAAACCACAAACTGGAATATTTTGA
- Protein Sequence
- MPGNYKRKSTRLSWSKDDMDKAIEDIKNKKCGWLSAAKKYKVPQATLRRHFKAIPQNMGRFKPTFNQEMEKQMVQHILDFESRFFGFTTTEVRKLAYEFAFNPLTLRSPEPTSAARAKAFTKPQVLKFFEILTPLVAEIPPHNIYNMDESRLSTVQRPPKVFALKGKKQVGAITSAERGQHITVVVCASATGNFVPPALIFPRKKPQTGIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356799;
- 90% Identity
- iTF_01356799;
- 80% Identity
- iTF_01356799;